RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ZNF670Q9BS34 389 aa10.33□□□□□ -0.76
SS18-205ENST00000542420 LRRC4CQ9HCJ2 640 aa10.33□□□□□ -0.76
SS18-205ENST00000542420 HESX1Q9UBX0 185 aa10.33□□□□□ -0.76
SS18-205ENST00000542420 GNEQ9Y223 722 aaKnown RBP10.33□□□□□ -0.76
SS18-205ENST00000542420 DCAF8L1A6NGE4 600 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 SGK1O00141 431 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 PECAM1P16284 738 aaPredicted RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 ATP2A2P16615 1042 aaKnown RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 HOXA11P31270 313 aaPredicted RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 SSTR3P32745 418 aaPredicted RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 SLC6A3Q01959 620 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 ACTN3Q08043 901 aaPredicted RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 XRCC4Q13426 336 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 TRIP13Q15645 432 aaPredicted RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 HIF1AQ16665 826 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 EFHC2Q5JST6 749 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 TMEM63BQ5T3F8 832 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 TXNRD3NBQ6F5E7 133 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 GBP7Q8N8V2 638 aaPredicted RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 ALKBH8Q96BT7 664 aaKnown RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 HAUS1Q96CS2 278 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 HSFY1Q96LI6 401 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 SAYSD1Q9NPB0 183 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 NKIRAS1Q9NYS0 192 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 RCOR3Q9P2K3 495 aaPredicted RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 NAALADL1Q9UQQ1 740 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 CLUHO75153 1309 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 TMEM120BA0PK00 339 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 CHADO15335 359 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 PRPSAP2O60256 369 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 KPNA6O60684 536 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 OAS1P00973 400 aaKnown RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 PFKMP08237 780 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 HOXC8P31273 242 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 OLFML1Q6UWY5 402 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 SLC26A9Q7LBE3 791 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 CATSPER4Q7RTX7 472 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 TRABD2AQ86V40 505 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 C2orf69Q8N8R5 385 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 SLC35F5Q8WV83 523 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 MIEF2Q96C03 454 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 TACO1Q9BSH4 297 aaKnown RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 DHRS4Q9BTZ2 278 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 MAK16Q9BXY0 300 aaKnown RBP10.32□□□□□ -0.76
SS18-205ENST00000542420 PAK5Q9P286 719 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 HMGXB4Q9UGU5 601 aa10.32□□□□□ -0.76
SS18-205ENST00000542420 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 EXOC1LA0A1B0GW35 172 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 BCLAF3A2AJT9 711 aaKnown RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 PIRO00625 290 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 NPTXRO95502 500 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 SMIM10L2AP0DMW4 78 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 SMIM10L2BP0DMW5 78 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 GNAT1P11488 350 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 BRAFP15056 766 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 PDGFRAP16234 1089 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 PAX3P23760 479 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 CPT1AP50416 773 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 BCAT1P54687 386 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 EIF3EP60228 445 aaKnown RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 ROR1Q01973 937 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 BST2Q10589 180 aaKnown RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 MAP2K5Q13163 448 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 GOLGA7BQ2TAP0 167 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 FBXW10Q5XX13 1052 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 MAP1SQ66K74 1059 aaPredicted RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 SLC9A4Q6AI14 798 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 FAM183BPQ6ZVS7 135 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 CYP4V2Q6ZWL3 525 aaPredicted RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 CDR2LQ86X02 465 aaPredicted RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 RFX6Q8HWS3 928 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 MDM1Q8TC05 714 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 RXFP2Q8WXD0 754 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 CPT1BQ92523 772 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 CENPIQ92674 756 aaPredicted RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 LRRC39Q96DD0 335 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 RNF157Q96PX1 679 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 ZWILCHQ9H900 591 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 PNPLA8Q9NP80 782 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 KLHL11Q9NVR0 708 aa10.31□□□□□ -0.76
SS18-205ENST00000542420 PSMC3IPQ9P2W1 217 aaPredicted RBP10.31□□□□□ -0.76
SS18-205ENST00000542420 FAM47DPA6NHR8 397 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 SDC4P31431 198 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 SLCO1A2P46721 670 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 NR2C2P49116 596 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 CTCFP49711 727 aaPredicted RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 MNAT1P51948 309 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 IL9RQ01113 521 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 PLCB3Q01970 1234 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 RNASELQ05823 741 aaKnown RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 DPYSL3Q14195 570 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 QPCTQ16769 361 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 SV2CQ496J9 727 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 C9orf57Q5W0N0 161 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 OR6B2Q6IFH4 312 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 CCDC13Q8IYE1 715 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 PDIK1LQ8N165 341 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 TOP6BLQ8N6T0 577 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 ANKRD52Q8NB46 1076 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 SPATA18Q8TC71 538 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms