RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 STX1AQ16623 288 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 SLC39A12Q504Y0 691 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 TMEM196Q5HYL7 178 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 C9orf57Q5W0N0 161 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 TTC30AQ86WT1 665 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 CSGALNACT2Q8N6G5 542 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 MAB21L3Q8N8X9 362 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 C1orf127Q8N9H9 656 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 KDF1Q8NAX2 398 aaPredicted RBP9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 DEFB124Q8NES8 71 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 CXorf38Q8TB03 319 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 PLEKHO2Q8TD55 490 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 ZCCHC14Q8WYQ9 949 aaKnown RBP9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 CHFRQ96EP1 664 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 MED15Q96RN5 788 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 SLC46A2Q9BY10 475 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 TPSD1Q9BZJ3 242 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 METTL14Q9HCE5 456 aaKnown RBP9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 TMEM9BQ9NQ34 198 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 HPS4Q9NQG7 708 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 DPP3Q9NY33 737 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 ITGA11Q9UKX5 1188 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 LHX6Q9UPM6 363 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 CACNA1GO43497 2377 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 PTPRJQ12913 1337 aa9.3□□□□□ -0.92
CLSTN3-212ENST00000541770 CHD8Q9HCK8 2581 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 ADAMTS9Q9P2N4 1935 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 LNP1A1A4G5 178 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 BCLAF3A2AJT9 711 aaKnown RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 TMEM8BA6NDV4 472 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 OTOL1A6NHN0 477 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 SRRM3A6NNA2 597 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 LRRIQ3A6PVS8 624 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 PATE3B3GLJ2 98 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 TRDMT1O14717 391 aaKnown RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 APBB3O95704 486 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 TNNC2P02585 160 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 ODC1P11926 461 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 TNNI1P19237 187 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 DRD1P21728 446 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 GTF2H1P32780 548 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 PNPLA4P41247 253 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 DHPSP49366 369 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 AARSP49588 968 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 VAMP7P51809 220 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 MARSP56192 900 aaKnown RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 RBP5P82980 135 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 TYRO3Q06418 890 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 DMC1Q14565 340 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 TRAPPC11Q7Z392 1133 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 CMTM8Q8IZV2 173 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 LRRC52Q8N7C0 313 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 OR5B17Q8NGF7 314 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 ENOX1Q8TC92 643 aaKnown RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 ZNF516Q92618 1163 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 EXOC4Q96A65 974 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 CCDC127Q96BQ5 260 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 EEF2KMTQ96G04 330 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 ZNF560Q96MR9 790 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 P2RY13Q9BPV8 354 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 SRRTQ9BXP5 876 aaKnown RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 MTMR12Q9C0I1 747 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 FBRSL1Q9HCM7 1045 aaKnown RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 MAGED2Q9UNF1 606 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 CCL26Q9Y258 94 aa9.29□□□□□ -0.92
CLSTN3-212ENST00000541770 PPEF2O14830 753 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 STX10O60499 249 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 C4BPAP04003 597 aaKnown RBP9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 ITGB3P05106 788 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 CEACAM1P13688 526 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 ATF6P18850 670 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 TYMPP19971 482 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 TUFMP49411 452 aaKnown RBP9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 TAF6P49848 677 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 LILRA4P59901 499 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 DLG4P78352 724 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 RING1Q06587 406 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 ZACNQ401N2 412 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 USP39Q53GS9 565 aaKnown RBP9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 C1orf220Q5T0J3 134 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 LMBRD2Q68DH5 695 aaPredicted RBP9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 NAIF1Q69YI7 327 aaPredicted RBP9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 CYP2U1Q7Z449 544 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 STKLD1Q8NE28 680 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 TSTD1Q8NFU3 115 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 PIGKQ92643 395 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 SENP8Q96LD8 212 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 FAM83CQ9BQN1 747 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 FUCA2Q9BTY2 467 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 THAP9Q9H5L6 903 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 IL21Q9HBE4 155 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 ABI2Q9NYB9 513 aaPredicted RBP9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 ARMCX3Q9UH62 379 aaPredicted RBP9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 SIX4Q9UIU6 781 aa9.28□□□□□ -0.92
CLSTN3-212ENST00000541770 CEP192Q8TEP8 1941 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 PMM2O15305 246 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 HYAL3O43820 417 aaPredicted RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 STAU1O95793 577 aaKnown RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 WEE1P30291 646 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 POLR2BP30876 1174 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms