RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SPATA21Q7Z572 469 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 PRPF39Q86UA1 669 aaKnown RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 UNC5BQ8IZJ1 945 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 CNPY4Q8N129 248 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 USP15Q9Y4E8 981 aaPredicted RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 CLDN5O00501 218 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 TSPAN1O60635 241 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 GABBR2O75899 941 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 APRTP07741 180 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 TAC1P20366 129 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 RBL1P28749 1068 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 GTF2A1P52655 376 aaPredicted RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 MCCD1P59942 119 aaPredicted RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 BMPR2Q13873 1038 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 CENPUQ71F23 418 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 ADAM32Q8TC27 787 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 FAM172AQ8WUF8 416 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 ECT2Q9H8V3 914 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 TIMM13Q9Y5L4 95 aaPredicted RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 SLC25A27O95847 323 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 TRUB2O95900 331 aaKnown RBP17.68■□□□□ 0.42
USP28-208ENST00000540438 OLIG2Q13516 323 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 GRIK4Q16099 956 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 LVRNQ6Q4G3 990 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 MTHFD1LQ6UB35 978 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 FAM228AQ86W67 206 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 SLC35B2Q8TB61 432 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 CKAP2Q8WWK9 683 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 C16orf70Q9BSU1 422 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 TRIM6Q9C030 488 aaPredicted RBP17.68■□□□□ 0.42
USP28-208ENST00000540438 MEIS3P2A8K0S8 358 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 BTBD19C9JJ37 291 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 LSM8O95777 96 aaKnown RBP17.68■□□□□ 0.42
USP28-208ENST00000540438 SNAI1O95863 264 aaPredicted RBP17.68■□□□□ 0.42
USP28-208ENST00000540438 HIC1Q14526 733 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 MAMDC4Q6UXC1 1216 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.68■□□□□ 0.42
USP28-208ENST00000540438 TRABD2AQ86V40 505 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 TP53INP2Q8IXH6 220 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 ZNF395Q9H8N7 513 aaPredicted RBP17.68■□□□□ 0.42
USP28-208ENST00000540438 PRMT7Q9NVM4 692 aaPredicted RBP17.68■□□□□ 0.42
USP28-208ENST00000540438 PDE4DIPQ5VU43 2346 aa17.68■□□□□ 0.42
USP28-208ENST00000540438 CITO14578 2027 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 CCL15-CCL14A0A0B4J2E2 113 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 FAM47DPA6NHR8 397 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 PRPSAP2O60256 369 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 PFKMP08237 780 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 RPSAP08865 295 aaKnown RBP17.67■□□□□ 0.42
USP28-208ENST00000540438 GRM1Q13255 1194 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 CCL15Q16663 113 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 MARCH8Q5T0T0 291 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 AGGF1Q8N302 714 aaeCLIP17.67■□□□□ 0.42
USP28-208ENST00000540438 GPRC5AQ8NFJ5 357 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 CXorf38Q8TB03 319 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 TMEM40Q8WWA1 233 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 DNAJB3Q8WWF6 145 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 P3H4Q92791 437 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 FAM149B1Q96BN6 582 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 FAF2Q96CS3 445 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 SMC6Q96SB8 1091 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 PAFAH2Q99487 392 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 TACO1Q9BSH4 297 aaKnown RBP17.67■□□□□ 0.42
USP28-208ENST00000540438 DHX35Q9H5Z1 703 aaKnown RBP17.67■□□□□ 0.42
USP28-208ENST00000540438 CPA4Q9UI42 421 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 PPP2R3BQ9Y5P8 575 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 MAD1L1Q9Y6D9 718 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 CCDC195A0A1B0GUA6 201 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 IGF2BP3O00425 579 aaKnown RBP eCLIP17.67■□□□□ 0.42
USP28-208ENST00000540438 TARSP26639 723 aaKnown RBP17.67■□□□□ 0.42
USP28-208ENST00000540438 AFF1P51825 1210 aaKnown RBP17.67■□□□□ 0.42
USP28-208ENST00000540438 GBE1Q04446 702 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 SPDYCQ5MJ68 293 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 ICE2Q659A1 982 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 ECHDC2Q86YB7 292 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 CENPTQ96BT3 561 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 TMEM109Q9BVC6 243 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 NPHS2Q9NP85 383 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 PCDHGC3Q9UN70 934 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 BPTFQ12830 3046 aa17.67■□□□□ 0.42
USP28-208ENST00000540438 A8MXQ7 604 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 KBTBD13C9JR72 458 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 MCF2LO15068 1137 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 MED7O43513 233 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 CDC25CP30307 473 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 STAT4Q14765 748 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 KBTBD12Q3ZCT8 623 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 CCDC14Q49A88 953 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 HHATQ5VTY9 493 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 FAM131BQ86XD5 332 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 BCO2Q9BYV7 579 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 SLC13A1Q9BZW2 595 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 CCDC78A2IDD5 438 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 CPP00450 1065 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 DPYSL3Q14195 570 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 SEPT7Q16181 437 aaKnown RBP17.66■□□□□ 0.42
USP28-208ENST00000540438 PAN2Q504Q3 1202 aaKnown RBP17.66■□□□□ 0.42
USP28-208ENST00000540438 SYDE1Q6ZW31 735 aaPredicted RBP17.66■□□□□ 0.42
USP28-208ENST00000540438 PPM1NQ8N819 430 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 OR6J1Q8NGC5 347 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms