RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 LRRC38Q5VT99 294 aa21.2■□□□□ 0.98
TMEM260-203ENST00000539559 DCAF15Q66K64 600 aa21.2■□□□□ 0.98
TMEM260-203ENST00000539559 DENND1BQ6P3S1 775 aa21.2■□□□□ 0.98
TMEM260-203ENST00000539559 SH3TC2Q8TF17 1288 aa21.2■□□□□ 0.98
TMEM260-203ENST00000539559 CGRRF1Q99675 332 aa21.2■□□□□ 0.98
TMEM260-203ENST00000539559 SYNCQ9H7C4 482 aa21.2■□□□□ 0.98
TMEM260-203ENST00000539559 CISHQ9NSE2 258 aa21.2■□□□□ 0.98
TMEM260-203ENST00000539559 IKBKGQ9Y6K9 419 aa21.2■□□□□ 0.98
TMEM260-203ENST00000539559 NPTXRO95502 500 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 KCNA2P16389 499 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 TBXAS1P24557 533 aaPredicted RBP21.19■□□□□ 0.98
TMEM260-203ENST00000539559 SERPINB4P48594 390 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 POLE2P56282 527 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 PIGHQ14442 188 aaPredicted RBP21.19■□□□□ 0.98
TMEM260-203ENST00000539559 RAB6CQ53S08 254 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 SPDYAQ5MJ70 313 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 IRGCQ6NXR0 463 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 TMEM35BQ8NCS4 154 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 DEPTORQ8TB45 409 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 CALN1Q9BXU9 219 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 SLC13A1Q9BZW2 595 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 RAB6CQ9H0N0 254 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 CYTH4Q9UIA0 394 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 CNTN6Q9UQ52 1028 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 MTO1Q9Y2Z2 717 aaKnown RBP21.19■□□□□ 0.98
TMEM260-203ENST00000539559 INHBAP08476 426 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 ZCCHC18P0CG32 403 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 RARBP10826 455 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 ZNF132P52740 706 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 EIF3EP60228 445 aaKnown RBP21.19■□□□□ 0.98
TMEM260-203ENST00000539559 ACTR2P61160 394 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 BMPR2Q13873 1038 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 PTPN20Q4JDL3 420 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 CMPK2Q5EBM0 449 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 PCGF5Q86SE9 256 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 APOPT1Q96IL0 206 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 CYTH2Q99418 400 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 ASB3Q9Y575 518 aa21.19■□□□□ 0.98
TMEM260-203ENST00000539559 AHCYL1O43865 530 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 UGT1A9O60656 530 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 STAM2O75886 525 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 USP1O94782 785 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 DHRS4L1P0CG22 281 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 SKIP12755 728 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 CACNA2D1P54289 1103 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 MTMR2Q13614 643 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 SGSM1Q2NKQ1 1148 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 PPM1NQ8N819 430 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 UGT1A7Q9HAW7 530 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 UGT1A10Q9HAW8 530 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 UGT1A8Q9HAW9 530 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 DDX56Q9NY93 547 aaKnown RBP21.18■□□□□ 0.98
TMEM260-203ENST00000539559 PPARGC1AQ9UBK2 798 aaKnown RBP21.18■□□□□ 0.98
TMEM260-203ENST00000539559 CXorf49A8MYA2 514 aaPredicted RBP21.18■□□□□ 0.98
TMEM260-203ENST00000539559 LGR5O75473 907 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 TOP3BO95985 862 aaKnown RBP21.18■□□□□ 0.98
TMEM260-203ENST00000539559 RBP3P10745 1247 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 CD19P15391 556 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 KDELR1P24390 212 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 RAP1GAPP47736 663 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 ZNF200P98182 395 aaPredicted RBP21.18■□□□□ 0.98
TMEM260-203ENST00000539559 VSIG10LQ86VR7 867 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 ARID3BQ8IVW6 561 aaPredicted RBP21.18■□□□□ 0.98
TMEM260-203ENST00000539559 ATG4CQ96DT6 458 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 ACAP3Q96P50 834 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 PPCSQ9HAB8 311 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 JPH1Q9HDC5 661 aaPredicted RBP21.18■□□□□ 0.98
TMEM260-203ENST00000539559 SCOCQ9UIL1 159 aa21.18■□□□□ 0.98
TMEM260-203ENST00000539559 RPL26L1Q9UNX3 145 aaKnown RBP21.18■□□□□ 0.98
TMEM260-203ENST00000539559 KIAA1217Q5T5P2 1943 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 TRIM49D1C9J1S8 452 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 E7ESA3 106 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 PIK3R2O00459 728 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 HNRNPCL1O60812 293 aaKnown RBP21.17■□□□□ 0.98
TMEM260-203ENST00000539559 PSAPP07602 524 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 DPYSL3Q14195 570 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 RBM15BQ8NDT2 890 aaKnown RBP21.17■□□□□ 0.98
TMEM260-203ENST00000539559 SRPK1Q96SB4 655 aaKnown RBP21.17■□□□□ 0.98
TMEM260-203ENST00000539559 IMPG2Q9BZV3 1241 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 RNF146Q9NTX7 359 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 KRT3P12035 628 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 OCRLQ01968 901 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 AP1ARQ63HQ0 302 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 SH2D5Q6ZV89 423 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 APOBEC3FQ8IUX4 373 aaKnown RBP21.17■□□□□ 0.98
TMEM260-203ENST00000539559 KCTD6Q8NC69 237 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 TTC1Q99614 292 aa21.17■□□□□ 0.98
TMEM260-203ENST00000539559 STX18Q9P2W9 335 aaKnown RBP21.17■□□□□ 0.98
TMEM260-203ENST00000539559 A0A0B4J269 797 aa21.16■□□□□ 0.98
TMEM260-203ENST00000539559 IQANK1A0A1B0GTG1 560 aa21.16■□□□□ 0.98
TMEM260-203ENST00000539559 DNAJC6O75061 913 aa21.16■□□□□ 0.98
TMEM260-203ENST00000539559 IRX4P78413 519 aa21.16■□□□□ 0.98
TMEM260-203ENST00000539559 SH3PXD2AQ5TCZ1 1133 aa21.16■□□□□ 0.98
TMEM260-203ENST00000539559 ANGEL2Q5VTE6 544 aaKnown RBP21.16■□□□□ 0.98
TMEM260-203ENST00000539559 SPATA18Q8TC71 538 aa21.16■□□□□ 0.98
TMEM260-203ENST00000539559 ALKBH8Q96BT7 664 aaKnown RBP21.16■□□□□ 0.98
TMEM260-203ENST00000539559 ZNF668Q96K58 619 aaPredicted RBP21.16■□□□□ 0.98
TMEM260-203ENST00000539559 TCHPQ9BT92 498 aa21.16■□□□□ 0.98
TMEM260-203ENST00000539559 VCXQ9H320 206 aa21.16■□□□□ 0.98
TMEM260-203ENST00000539559 STRIP2Q9ULQ0 834 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms