RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 CCNG2Q16589 344 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 EMC1Q8N766 993 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 LRRC52Q8N7C0 313 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 BEST2Q8NFU1 509 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 ACSF2Q96CM8 615 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 CHMP6Q96FZ7 201 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 FAM118BQ9BPY3 351 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 SELENOSQ9BQE4 189 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 KATNAL1Q9BW62 490 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 APOL6Q9BWW8 343 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 NT5C1AQ9BXI3 368 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 ADAM7Q9H2U9 754 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 KLK14Q9P0G3 267 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 KIAA1257Q9ULG3 409 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 SNX9Q9Y5X1 595 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 SMIM28A0A1B0GU29 152 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 C3orf70A6NLC5 250 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 DUSP11O75319 330 aaKnown RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 KRT1P04264 644 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 PSMA2P25787 234 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 IL1R2P27930 398 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 TM4SF4P48230 202 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 SLC25A11Q02978 314 aaKnown RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 PTK6Q13882 451 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 PKDCCQ504Y2 493 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 SPOCD1Q6ZMY3 1216 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 TTC39CQ8N584 583 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 ARRDC4Q8NCT1 418 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 SMG8Q8ND04 991 aaKnown RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 FNIP1Q8TF40 1166 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 ZNF317Q96PQ6 595 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 SLC4A5Q9BY07 1137 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 METTL5Q9NRN9 209 aaKnown RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 WDR35Q9P2L0 1181 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 TSPAN16Q9UKR8 245 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 GABRQQ9UN88 632 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 VPS9D1Q9Y2B5 631 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 PIRO00625 290 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 SPTLC1O15269 473 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 LRCH4O75427 683 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 CYBAP13498 195 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 GBP1P32455 592 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 GJA9P57773 515 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 ZKSCAN8Q15776 578 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 SOWAHAQ2M3V2 549 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 LACTB2Q53H82 288 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 SPDYCQ5MJ68 293 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 WLSQ5T9L3 541 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 DPH6Q7L8W6 267 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 C7orf31Q8N865 590 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 ATL2Q8NHH9 583 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 TRIB2Q92519 343 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 RBM41Q96IZ5 413 aaKnown RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 LPIN3Q9BQK8 851 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 FAM129AQ9BZQ8 928 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 TRIM6Q9C030 488 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-210ENST00000538120 RALGAPA2Q2PPJ7 1873 aa11.27□□□□□ -0.61
CLIP1-210ENST00000538120 CITO14578 2027 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 PCNTO95613 3336 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 CA12O43570 354 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 HCRTO43612 131 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 KCNE1P15382 129 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 PTPN7P35236 360 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 CDKN2BP42772 138 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 SLCO1A2P46721 670 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 PMS2P54278 862 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 SOX4Q06945 474 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 SREBF2Q12772 1141 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 XRCC4Q13426 336 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 SLC29A2Q14542 456 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 PPP1R7Q15435 360 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 GOLGA7BQ2TAP0 167 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 PPP1R26Q5T8A7 1209 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 TRNP1Q6NT89 227 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 RHBDF2Q6PJF5 856 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 SYDE1Q6ZW31 735 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 ACOT1Q86TX2 421 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 TTC30AQ86WT1 665 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 ATXN2LQ8WWM7 1075 aaKnown RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 PARP2Q9UGN5 583 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 UBQLN1Q9UMX0 589 aaKnown RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 hCG_1818297A0A087WSY0 165 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 C6orf222P0C671 652 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 FGFR1P11362 822 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 CAP1Q01518 475 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 TRIP13Q15645 432 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 KAZNQ674X7 775 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 POLNQ7Z5Q5 900 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 LRRC34Q8IZ02 419 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 GIMAP7Q8NHV1 300 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 N4BP2L2Q92802 583 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 WNT8BQ93098 351 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 PIWIL1Q96J94 861 aaKnown RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 SEMA4AQ9H3S1 761 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 SYNCQ9H7C4 482 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 AAASQ9NRG9 546 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 HOMER3Q9NSC5 361 aa11.26□□□□□ -0.61
CLIP1-210ENST00000538120 DDX56Q9NY93 547 aaKnown RBP11.26□□□□□ -0.61
CLIP1-210ENST00000538120 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms