RNA–Protein interactions for RNA: ENST00000531466.1

PTPRK-220, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5

Gene PTPRK, Length 311 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-220ENST00000531466 SLC35A4Q96G79 324 aa5.65□□□□□ -1.5
PTPRK-220ENST00000531466 TRMT13Q9NUP7 481 aaKnown RBP5.65□□□□□ -1.5
PTPRK-220ENST00000531466 LPAR3Q9UBY5 353 aa5.65□□□□□ -1.5
PTPRK-220ENST00000531466 ZNF112Q9UJU3 913 aa5.65□□□□□ -1.5
PTPRK-220ENST00000531466 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.65□□□□□ -1.5
PTPRK-220ENST00000531466 CES2O00748 559 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 TOMM40O96008 361 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 CCND1P24385 295 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 ID2Q02363 134 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 KRT17Q04695 432 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 SRSF1Q07955 248 aaKnown RBP eCLIP5.64□□□□□ -1.51
PTPRK-220ENST00000531466 SEC23BQ15437 767 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 PIM3Q86V86 326 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 SFTPA1Q8IWL2 248 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 TMEM171Q8WVE6 324 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 TMX2Q9Y320 296 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 TNKSO95271 1327 aa5.64□□□□□ -1.51
PTPRK-220ENST00000531466 B4DGG1 531 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 TLR2O60603 784 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 ME1P48163 572 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 COPB1P53618 953 aaKnown RBP5.63□□□□□ -1.51
PTPRK-220ENST00000531466 NKX6-1P78426 367 aaPredicted RBP5.63□□□□□ -1.51
PTPRK-220ENST00000531466 FAM50AQ14320 339 aaKnown RBP5.63□□□□□ -1.51
PTPRK-220ENST00000531466 MLC1Q15049 377 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 KHDC1LQ5JSQ8 128 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 TMTC4Q5T4D3 741 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 UBAP2Q5T6F2 1119 aaKnown RBP5.63□□□□□ -1.51
PTPRK-220ENST00000531466 COLCA1Q6ZS62 124 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 CATIPQ7Z7H3 387 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 ANKRD13BQ86YJ7 626 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.63□□□□□ -1.51
PTPRK-220ENST00000531466 THOC3Q96J01 351 aaKnown RBP5.63□□□□□ -1.51
PTPRK-220ENST00000531466 C17orf80Q9BSJ5 609 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 SLC13A1Q9BZW2 595 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 FAM234AQ9H0X4 552 aa5.63□□□□□ -1.51
PTPRK-220ENST00000531466 MT-CO3P00414 261 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 KCNA3P22001 575 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 THBS4P35443 961 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 DGKEP52429 567 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 NPY5RQ15761 445 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 TMEM65Q6PI78 240 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 KRT78Q8N1N4 520 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 ARFGAP1Q8N6T3 406 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 CAMK1GQ96NX5 476 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 HS3ST3B1Q9Y662 390 aa5.62□□□□□ -1.51
PTPRK-220ENST00000531466 APEHP13798 732 aaKnown RBP5.61□□□□□ -1.51
PTPRK-220ENST00000531466 CDKN2AP42771 156 aaKnown RBP5.61□□□□□ -1.51
PTPRK-220ENST00000531466 SLC11A2P49281 568 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 PRKAG1P54619 331 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 CFHR1Q03591 330 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 LMAN2Q12907 356 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 PGS1Q32NB8 556 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 ZNF549Q6P9A3 640 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 DEF8Q6ZN54 512 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 LIX1LQ8IVB5 337 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 CTAGE1Q96RT6 745 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 MESP1Q9BRJ9 268 aa5.61□□□□□ -1.51
PTPRK-220ENST00000531466 SARS2Q9NP81 518 aaKnown RBP5.61□□□□□ -1.51
PTPRK-220ENST00000531466 PRSS44E7EML9 344 aa5.6□□□□□ -1.51
PTPRK-220ENST00000531466 MYO1CO00159 1063 aa5.6□□□□□ -1.51
PTPRK-220ENST00000531466 PHKG2P15735 406 aa5.6□□□□□ -1.51
PTPRK-220ENST00000531466 GKP32189 559 aa5.6□□□□□ -1.51
PTPRK-220ENST00000531466 CDKN1CP49918 316 aaPredicted RBP5.6□□□□□ -1.51
PTPRK-220ENST00000531466 SUMO2P61956 95 aaKnown RBP5.6□□□□□ -1.51
PTPRK-220ENST00000531466 MGAT5BQ3V5L5 792 aa5.6□□□□□ -1.51
PTPRK-220ENST00000531466 TMX1Q9H3N1 280 aa5.6□□□□□ -1.51
PTPRK-220ENST00000531466 CPA4Q9UI42 421 aa5.6□□□□□ -1.51
PTPRK-220ENST00000531466 PSMD9O00233 223 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 CNOT3O75175 753 aaKnown RBP5.59□□□□□ -1.51
PTPRK-220ENST00000531466 TULP3O75386 442 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 PMPCBO75439 489 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 POU2F2P09086 479 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 CYP2C9P11712 490 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 CDK11BP21127 795 aaKnown RBP5.59□□□□□ -1.51
PTPRK-220ENST00000531466 LARS2Q15031 903 aaKnown RBP5.59□□□□□ -1.51
PTPRK-220ENST00000531466 DAB2IPQ5VWQ8 1189 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 ANO7Q6IWH7 933 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 LVRNQ6Q4G3 990 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 PELI3Q8N2H9 469 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 RSPRY1Q96DX4 576 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 ARMT1Q9H993 441 aa5.59□□□□□ -1.51
PTPRK-220ENST00000531466 GBA2Q9HCG7 927 aaPredicted RBP5.59□□□□□ -1.51
PTPRK-220ENST00000531466 T-ENOLP0DO92 83 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 CTSAP10619 480 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 RECQLP46063 649 aaPredicted RBP5.58□□□□□ -1.52
PTPRK-220ENST00000531466 DIO1P49895 249 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 WNT3P56703 355 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 RPS13P62277 151 aaKnown RBP5.58□□□□□ -1.52
PTPRK-220ENST00000531466 RHDQ02161 417 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 C4orf46Q504U0 113 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 DCDC5Q6ZRR9 648 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 Q6ZTC4 211 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 PTCHD4Q6ZW05 846 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 ZBTB8BQ8NAP8 495 aaPredicted RBP5.58□□□□□ -1.52
PTPRK-220ENST00000531466 MAFAQ8NHW3 353 aaPredicted RBP5.58□□□□□ -1.52
PTPRK-220ENST00000531466 BPIFB1Q8TDL5 484 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 ZFYVE19Q96K21 471 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 SMAD5Q99717 465 aaKnown RBP5.58□□□□□ -1.52
PTPRK-220ENST00000531466 TRMOQ9BU70 441 aa5.58□□□□□ -1.52
PTPRK-220ENST00000531466 GTPBP4Q9BZE4 634 aaKnown RBP5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms