RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 TINAGL1Q9GZM7 467 aaPredicted RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 SIK2Q9H0K1 926 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 GPR35Q9HC97 309 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 UBN1Q9NPG3 1134 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 ZSCAN32Q9NX65 697 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 TRPM5Q9NZQ8 1165 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 XPR1Q9UBH6 696 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 RGS17Q9UGC6 210 aaPredicted RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 SRP68Q9UHB9 627 aaKnown RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 CHST2Q9Y4C5 530 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 FER1L4A9Z1Z3 1794 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 A0A087WZ62 844 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 A0A0B4J269 797 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 A6NLC8 198 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 OVOL3O00110 214 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 FCHO1O14526 889 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 PJA2O43164 708 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 KCNQ3O43525 872 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 MFAP3LO75121 409 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 SOAT2O75908 522 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 HAUS5O94927 633 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 SCAF4O95104 1147 aaKnown RBP3.76□□□□□ -1.81
CD44-229ENST00000528672 CHEK2O96017 543 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 LMNAP02545 664 aaKnown RBP3.76□□□□□ -1.81
CD44-229ENST00000528672 AMHP03971 560 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 TPH1P17752 444 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 FGFR4P22455 802 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 FDXRP22570 491 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 ACVR2AP27037 513 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 PAPOLAP51003 745 aaKnown RBP3.76□□□□□ -1.81
CD44-229ENST00000528672 HNRNPMP52272 730 aaKnown RBP eCLIP3.76□□□□□ -1.81
CD44-229ENST00000528672 OCA2Q04671 838 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 PTCHD3Q3KNS1 767 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 LIN54Q6MZP7 749 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 TAF2Q6P1X5 1199 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 CASC1Q6TDU7 716 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 CRTC1Q6UUV9 634 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 KIAA0408Q6ZU52 694 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 SPRED1Q7Z699 444 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 KRT73Q86Y46 540 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 C2CD5Q86YS7 1000 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 TMPRSS6Q8IU80 811 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 TMTC1Q8IUR5 882 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 CPT1CQ8TCG5 803 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 SMCR8Q8TEV9 937 aaPredicted RBP3.76□□□□□ -1.81
CD44-229ENST00000528672 ZNF503Q96F45 646 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 PPP1R9BQ96SB3 815 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 ADAM2Q99965 735 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 PCDHAC1Q9H158 963 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 DHX36Q9H2U1 1008 aaKnown RBP3.76□□□□□ -1.81
CD44-229ENST00000528672 SEPSECSQ9HD40 501 aaKnown RBP3.76□□□□□ -1.81
CD44-229ENST00000528672 ETAA1Q9NY74 926 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 CTTNBP2NLQ9P2B4 639 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 ZMYND8Q9ULU4 1186 aaPredicted RBP3.76□□□□□ -1.81
CD44-229ENST00000528672 RABGAP1Q9Y3P9 1069 aa3.76□□□□□ -1.81
CD44-229ENST00000528672 LOC102723971A0A1B0GUV8 181 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 GOLGA6L6A8MZA4 724 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 B5MCH6 92 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 TISP43B9A030 160 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 B9A039 149 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 CYR61O00622 381 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 HOXC11O43248 304 aaPredicted RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 FZD7O75084 574 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 COQ9O75208 318 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 FAM155BO75949 473 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 USP1O94782 785 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 BAIAP3O94812 1187 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 SUN1O94901 812 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 VNN1O95497 513 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 PIM1P11309 404 aaPredicted RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 CYP2C9P11712 490 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 NPPBP16860 134 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 EGR1P18146 543 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 CAPN3P20807 821 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 CALRP27797 417 aaKnown RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 CST5P28325 142 aaPredicted RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 ADD2P35612 726 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 MAN2A2P49641 1150 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 CPT1AP50416 773 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 TLE2Q04725 743 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 FOXE3Q13461 319 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 TRPC3Q13507 836 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 TOB2Q14106 344 aaPredicted RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 ARHGEF7Q14155 803 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 EFR3AQ14156 821 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 GEN1Q17RS7 908 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 INSCQ1MX18 579 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 USP39Q53GS9 565 aaKnown RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 TMTC4Q5T4D3 741 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 AGAP9Q5VTM2 703 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 FAM160B1Q5W0V3 765 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 RAP1GAP2Q684P5 730 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 PLAG1Q6DJT9 500 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 DRICH1Q6PGQ1 229 aaPredicted RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 C4orf50Q6ZRC1 276 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 USP51Q70EK9 711 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 TBC1D1Q86TI0 1168 aaPredicted RBP3.75□□□□□ -1.81
CD44-229ENST00000528672 HEATR4Q86WZ0 1026 aa3.75□□□□□ -1.81
CD44-229ENST00000528672 CFAP52Q8N1V2 620 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms