RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ABI2Q9NYB9 513 aaPredicted RBP7.88□□□□□ -1.15
CD44-228ENST00000528455 DNAJB4Q9UDY4 337 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 ADAM28Q9UKQ2 775 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 BARX2Q9UMQ3 279 aaPredicted RBP7.88□□□□□ -1.15
CD44-228ENST00000528455 SNX9Q9Y5X1 595 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 FHOD1Q9Y613 1164 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 PTPRSQ13332 1948 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 CUL9Q8IWT3 2517 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 CASTOR2A6NHX0 329 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 LRRC53A6NM62 1247 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 F8VZ95 297 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 RBAK-RBAKDNI3L0D1 243 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 PPEF2O14830 753 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 SYN3O14994 580 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 NRDCO43847 1150 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 MFAP3LO75121 409 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 GFPT2O94808 682 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 OAZ2O95190 189 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 EFEMP2O95967 443 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 SERPING1P05155 500 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 RB1P06400 928 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 PAEPP09466 180 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 ODC1P11926 461 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 LAG3P18627 525 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 TYMPP19971 482 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 POU3F3P20264 500 aaPredicted RBP7.87□□□□□ -1.15
CD44-228ENST00000528455 WARSP23381 471 aaKnown RBP7.87□□□□□ -1.15
CD44-228ENST00000528455 SLC11A1P49279 550 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 GATMP50440 423 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 CDH8P55286 799 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 KRT17Q04695 432 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 INCA1Q0VD86 236 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 RAPGEF1Q13905 1077 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 MRPL58Q14197 206 aaKnown RBP7.87□□□□□ -1.15
CD44-228ENST00000528455 CCDC85BQ15834 202 aaPredicted RBP7.87□□□□□ -1.15
CD44-228ENST00000528455 MEA1Q16626 185 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 PDXDC1Q6P996 788 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 CYP26C1Q6V0L0 522 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 DSTYKQ6XUX3 929 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 METTL23Q86XA0 190 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 ZNF677Q86XU0 584 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 THEM5Q8N1Q8 247 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 GALNT6Q8NCL4 622 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 CCDC112Q8NEF3 446 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 OR13H1Q8NG92 308 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 EDARADDQ8WWZ3 215 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 TMEM176AQ96HP8 235 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 ZNF558Q96NG5 402 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 ACBD6Q9BR61 282 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 DNAJB12Q9NXW2 375 aaKnown RBP7.87□□□□□ -1.15
CD44-228ENST00000528455 SPG21Q9NZD8 308 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 RWDD3Q9Y3V2 267 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 PCDHB4Q9Y5E5 795 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 PCDHB12Q9Y5F1 795 aa7.87□□□□□ -1.15
CD44-228ENST00000528455 ELOA3CA0A087WX78 387 aaPredicted RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 SSU72P8A0A1W2PR75 194 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 LCHNA4D1U4 455 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 LINC01553A4QN01 128 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ELOA3DA6NLF2 546 aaPredicted RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 SHISA8B8ZZ34 492 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 RFXAPO00287 272 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 CYP26A1O43174 497 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 B4GALT3O60512 393 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 CILPO75339 1184 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 TNFRSF21O75509 655 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 KIF4AO95239 1232 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 PTMAP06454 111 aaKnown RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 IGFBP6P24592 240 aaPredicted RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 ANXA13P27216 316 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 SOX18P35713 384 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 PPM1AP35813 382 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 BMPR1AP36894 532 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ADH7P40394 386 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ZNF132P52740 706 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 RAD23BP54727 409 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ERVK-21P61565 698 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 PLCB3Q01970 1234 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 KLHL30Q0D2K2 578 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 STILQ15468 1287 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 CNGA2Q16280 664 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 USP41Q3LFD5 358 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ELOA3BQ3SY89 546 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 PAN2Q504Q3 1202 aaKnown RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 SPOUT1Q5T280 376 aaKnown RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 TTC39BQ5VTQ0 682 aaPredicted RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 WSCD1Q658N2 575 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 HGSNATQ68CP4 663 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 TMEM270Q6UE05 265 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 DDX53Q86TM3 631 aaKnown RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 CCDC170Q8IYT3 715 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 SLC39A11Q8N1S5 342 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 TMEM130Q8N3G9 435 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 PDCL2Q8N4E4 241 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 COLGALT1Q8NBJ5 622 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 C3orf58Q8NDZ4 430 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ELOA3Q8NG57 546 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 OR6B3Q8NGW1 331 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ZNF606Q8WXB4 792 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 KAT5Q92993 513 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ELMO3Q96BJ8 720 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms