RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 WHAMMQ8TF30 809 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 SAAL1Q96ER3 474 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 CBWD1Q9BRT8 395 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 GTPBP2Q9BX10 602 aaKnown RBP11.27□□□□□ -0.61
CPSF1-203ENST00000527916 CCDC86Q9H6F5 360 aaKnown RBP11.27□□□□□ -0.61
CPSF1-203ENST00000527916 GDAP2Q9NXN4 497 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 ABI2Q9NYB9 513 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-203ENST00000527916 SLC6A14Q9UN76 642 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 MAGED2Q9UNF1 606 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-203ENST00000527916 MYO16Q9Y6X6 1858 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 TRAV19A0A0A6YYK7 116 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 TGFB1I1O43294 461 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 NFATC1O95644 943 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 CKMP06732 381 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 USP17L7P0C7H9 530 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 HMGA1P17096 107 aaKnown RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 HOXD13P35453 343 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 P2RY2P41231 377 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 ME1P48163 572 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 SEC13P55735 322 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 ASIC1P78348 528 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 MRPS21P82921 87 aaKnown RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 RBP5P82980 135 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 TFAMQ00059 246 aaKnown RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 DNM1Q05193 864 aaKnown RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 PKP1Q13835 747 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 DUOXA1Q1HG43 343 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 EML3Q32P44 896 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 FAM26FQ5R3K3 315 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 FOXD4L5Q5VV16 416 aaPredicted RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 WSCD1Q658N2 575 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 ARMCX6Q7L4S7 300 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 DPH6Q7L8W6 267 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 DCP1BQ8IZD4 617 aaKnown RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 TMEM86AQ8N2M4 240 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 CCDC33Q8N5R6 958 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 ZSWIM2Q8NEG5 633 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 OLIG1Q8TAK6 271 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 FOXD4L4Q8WXT5 416 aaPredicted RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 ACBD6Q9BR61 282 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 PCIF1Q9H4Z3 704 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 PDE11AQ9HCR9 933 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 TRPC7Q9HCX4 862 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 POLMQ9NP87 494 aaPredicted RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 TMEM74BQ9NUR3 256 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 BCCIPQ9P287 314 aaKnown RBP eCLIP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 CGNQ9P2M7 1197 aaKnown RBP11.26□□□□□ -0.61
CPSF1-203ENST00000527916 PILRBQ9UKJ0 227 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 AGAP1Q9UPQ3 857 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 PCDHB9Q9Y5E1 797 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 PCDHB5Q9Y5E4 795 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 WNT6Q9Y6F9 365 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 UBE4BO95155 1302 aa11.26□□□□□ -0.61
CPSF1-203ENST00000527916 KIAA1549LQ6ZVL6 1849 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 GOLGA8IPA6NC78 632 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 GOLGA8JA6NMD2 632 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 K7EQS6 105 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 ITGB3P05106 788 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 POLR2BP30876 1174 aaKnown RBP11.25□□□□□ -0.61
CPSF1-203ENST00000527916 PTGER3P43115 390 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 CDR1P51861 262 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 ZNF77Q15935 545 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 NFE2Q16621 373 aaPredicted RBP11.25□□□□□ -0.61
CPSF1-203ENST00000527916 DUOXA2Q1HG44 320 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 HSF5Q4G112 596 aaPredicted RBP11.25□□□□□ -0.61
CPSF1-203ENST00000527916 LRRTM3Q86VH5 581 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 C12orf56Q8IXR9 622 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 CSGALNACT2Q8N6G5 542 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 GLIS3Q8NEA6 775 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 RIN3Q8TB24 985 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 TMEM174Q8WUU8 243 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 LEO1Q8WVC0 666 aaPredicted RBP11.25□□□□□ -0.61
CPSF1-203ENST00000527916 RLN3Q8WXF3 142 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 HPS3Q969F9 1004 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 ANKRD36BP1Q96IX9 119 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 FNBP1Q96RU3 617 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 INTS13Q9NVM9 706 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 HSPBP1Q9NZL4 362 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 USP25Q9UHP3 1055 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 MBD1Q9UIS9 605 aaPredicted RBP11.25□□□□□ -0.61
CPSF1-203ENST00000527916 GTF3C3Q9Y5Q9 886 aa11.25□□□□□ -0.61
CPSF1-203ENST00000527916 MYO18AQ92614 2054 aaKnown RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 GOLGA4Q13439 2230 aaKnown RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 GABRDO14764 452 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 AP5Z1O43299 807 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 HUS1O60921 280 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 PRPF40AO75400 957 aaKnown RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 MYL1P05976 194 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 SYPP08247 313 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 SERPINF2P08697 491 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 FAM163BP0C2L3 166 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 TMEM191BP0C7N4 346 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 SLFN14P0C7P3 912 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 ITPKAP23677 461 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 CMA1P23946 247 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 LHX1P48742 406 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 PDE6CP51160 858 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 RPL10AP62906 217 aaKnown RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 TSPY1Q01534 308 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 USP4Q13107 963 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms