RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 FUT10Q6P4F1 479 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 TMCO2Q7Z6W1 182 aaPredicted RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 TSEN2Q8NCE0 465 aaKnown RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 UBA3Q8TBC4 463 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 PHOSPHO2Q8TCD6 241 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 MAGOHBQ96A72 148 aaKnown RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 RTP3Q9BQQ7 232 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 MTIF3Q9H2K0 278 aaKnown RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 PCDH10Q9P2E7 1040 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 IP6K2Q9UHH9 426 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 ZMYND8Q9ULU4 1186 aaPredicted RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.85■□□□□ 0.77
VPS28-207ENST00000526977 CCDC85CA6NKD9 419 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 NT5C1B-RDH14C9J2C7 533 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 AGPSO00116 658 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 CHRNA3P32297 505 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 PLCB3Q01970 1234 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 TERF2Q15554 542 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 PPP1R15BQ5SWA1 713 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 FAM171A1Q5VUB5 890 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 KIAA0319Q5VV43 1072 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 MYCBPAPQ8TBZ2 947 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 SLC2A14Q8TDB8 520 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 STK32AQ8WU08 396 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 PLVAPQ9BX97 442 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 GPR62Q9BZJ7 368 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 MIS12Q9H081 205 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 CRTAC1Q9NQ79 661 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.84■□□□□ 0.77
VPS28-207ENST00000526977 STRIP2Q9ULQ0 834 aa19.84■□□□□ 0.77
VPS28-207ENST00000526977 UTP11Q9Y3A2 253 aaKnown RBP19.84■□□□□ 0.77
VPS28-207ENST00000526977 DAPK3O43293 454 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 SYF2O95926 243 aaKnown RBP19.83■□□□□ 0.77
VPS28-207ENST00000526977 CCDC130P13994 396 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 LAG3P18627 525 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 FGFR3P22607 806 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 TKTP29401 623 aaKnown RBP19.83■□□□□ 0.77
VPS28-207ENST00000526977 MAN1A1P33908 653 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 PTGIRP43119 386 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 BCAT1P54687 386 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 SLC8A3P57103 927 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 SNX16P57768 344 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 HTRA4P83105 476 aaPredicted RBP19.83■□□□□ 0.77
VPS28-207ENST00000526977 TSPY1Q01534 308 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 DHX34Q14147 1143 aaKnown RBP19.83■□□□□ 0.77
VPS28-207ENST00000526977 CYP1B1Q16678 543 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 MDH1BQ5I0G3 518 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 INTS6LQ5JSJ4 861 aaKnown RBP19.83■□□□□ 0.77
VPS28-207ENST00000526977 CYP4A22Q5TCH4 519 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 DNAJC24Q6P3W2 148 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 FAM171BQ6P995 826 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 KCNT2Q6UVM3 1135 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 RHOT1Q8IXI2 618 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 C18orf8Q96DM3 657 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 ZNF558Q96NG5 402 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 SLC9A7Q96T83 725 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 LPIN3Q9BQK8 851 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 MTUS1Q9ULD2 1270 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 INSL6Q9Y581 213 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 SLC4A7Q9Y6M7 1214 aa19.83■□□□□ 0.77
VPS28-207ENST00000526977 FAM187AA6NFU0 413 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 PBX3P40426 434 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 BST2Q10589 180 aaKnown RBP19.83■□□□□ 0.76
VPS28-207ENST00000526977 HLTFQ14527 1009 aaKnown RBP eCLIP19.83■□□□□ 0.76
VPS28-207ENST00000526977 LLGL1Q15334 1064 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 PTPN20Q4JDL3 420 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 TTC27Q6P3X3 843 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 TTC30AQ86WT1 665 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 FUKQ8N0W3 1084 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 SLC35F5Q8WV83 523 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 IGSF21Q96ID5 467 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 TRIM51Q9BSJ1 452 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 ZBED2Q9BTP6 218 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 MED4Q9NPJ6 270 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 CXXC1Q9P0U4 656 aaPredicted RBP19.83■□□□□ 0.76
VPS28-207ENST00000526977 PCYOX1Q9UHG3 505 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 USTQ9Y2C2 406 aa19.83■□□□□ 0.76
VPS28-207ENST00000526977 MYBPHLA2RUH7 354 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 PSTPIP1O43586 416 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 ADORA2BP29275 332 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 GGCXP38435 758 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 ZNF252P-AS1Q0IIN9 211 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 PDCLQ13371 301 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 MRPL58Q14197 206 aaKnown RBP19.82■□□□□ 0.76
VPS28-207ENST00000526977 VARS2Q5ST30 1063 aaKnown RBP19.82■□□□□ 0.76
VPS28-207ENST00000526977 CEP57Q86XR8 500 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 C3orf20Q8ND61 904 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 MCEEQ96PE7 176 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 ERP44Q9BS26 406 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 OXCT2Q9BYC2 517 aaPredicted RBP19.82■□□□□ 0.76
VPS28-207ENST00000526977 NEUROG2Q9H2A3 272 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 SYNCQ9H7C4 482 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 WDR35Q9P2L0 1181 aa19.82■□□□□ 0.76
VPS28-207ENST00000526977 GABRB2P47870 512 aa19.81■□□□□ 0.76
VPS28-207ENST00000526977 OGDHQ02218 1023 aa19.81■□□□□ 0.76
VPS28-207ENST00000526977 TAP1Q03518 808 aa19.81■□□□□ 0.76
VPS28-207ENST00000526977 HSP90B2PQ58FF3 399 aa19.81■□□□□ 0.76
VPS28-207ENST00000526977 DUPD1Q68J44 220 aa19.81■□□□□ 0.76
VPS28-207ENST00000526977 DCUN1D2Q6PH85 259 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms