RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	FCRL6	Q6DN72	434 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553		Q6ZWC4	215 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	SLC29A4	Q7RTT9	530 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	DNAJB14	Q8TBM8	379 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	SMCR8	Q8TEV9	937 aa	Predicted RBP	5.69	□□□□□ -1.5
CD44-223	ENST00000526553	XAGE5	Q8WWM1	108 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	CCDC136	Q96JN2	1154 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	APOL5	Q9BWW9	433 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	BRIP1	Q9BX63	1249 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	PCGF6	Q9BYE7	350 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	FAM83D	Q9H4H8	585 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	ADAMTS5	Q9UNA0	930 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	SNX13	Q9Y5W8	968 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	FER1L4	A9Z1Z3	1794 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	AQP7P3	A6NL99	342 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	RHPN2P1	A8MT19	583 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	RASAL1	O95294	804 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	MT-ND5	P03915	603 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	ENG	P17813	658 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	CTGF	P29279	349 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	EPHA3	P29320	983 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	PRKAR1B	P31321	381 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	HTRA4	P83105	476 aa	Predicted RBP	5.68	□□□□□ -1.5
CD44-223	ENST00000526553	TIAL1	Q01085	375 aa	Known RBP eCLIP	5.68	□□□□□ -1.5
CD44-223	ENST00000526553	DAG1	Q14118	895 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	ZNF750	Q32MQ0	723 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	FCRLB	Q6BAA4	426 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	SUMO4	Q6EEV6	95 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	ZNF788	Q6ZQV5	615 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	UNC13D	Q70J99	1090 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	PTF1A	Q7RTS3	328 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	KCTD20	Q7Z5Y7	419 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	CAND1	Q86VP6	1230 aa	Known RBP	5.68	□□□□□ -1.5
CD44-223	ENST00000526553	SDR16C5	Q8N3Y7	309 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	ZC3H10	Q96K80	434 aa	Known RBP	5.68	□□□□□ -1.5
CD44-223	ENST00000526553	SNX22	Q96L94	193 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	C17orf80	Q9BSJ5	609 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	PNPLA8	Q9NP80	782 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	ITGB1BP2	Q9UKP3	347 aa		5.68	□□□□□ -1.5
CD44-223	ENST00000526553	TARM1	B6A8C7	271 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553		F8W8V4	182 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553		M0R3H8	397 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	RGS10	O43665	173 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	RBMXL2	O75526	392 aa	Known RBP	5.67	□□□□□ -1.5
CD44-223	ENST00000526553	PIAS2	O75928	621 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	JTB	O76095	146 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	IL18RAP	O95256	599 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	ANXA2	P07355	339 aa	Known RBP	5.67	□□□□□ -1.5
CD44-223	ENST00000526553	PHKG2	P15735	406 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	IL1R2	P27930	398 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	GNAL	P38405	381 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	SAFB	Q15424	915 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
CD44-223	ENST00000526553	CYP1B1	Q16678	543 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	LY6K	Q17RY6	165 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	TBC1D25	Q3MII6	688 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	PCID2	Q5JVF3	399 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	HASPIN	Q8TF76	798 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	REPS1	Q96D71	796 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	ZNF668	Q96K58	619 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-223	ENST00000526553	THAP7	Q9BT49	309 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-223	ENST00000526553	DPCD	Q9BVM2	203 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-223	ENST00000526553	VN1R3	Q9BXE9	311 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	TRIM36	Q9NQ86	728 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	DKK4	Q9UBT3	224 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	SERGEF	Q9UGK8	458 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	CCNL1	Q9UK58	526 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-223	ENST00000526553	CAPN11	Q9UMQ6	739 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	CORO2B	Q9UQ03	480 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	AOX1	Q06278	1338 aa		5.67	□□□□□ -1.5
CD44-223	ENST00000526553	MASP2	O00187	686 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	RAB27B	O00194	218 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	VNN1	O95497	513 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	SLC5A1	P13866	664 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	TPH1	P17752	444 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	BTF3	P20290	206 aa	Known RBP	5.66	□□□□□ -1.5
CD44-223	ENST00000526553	UQCRC1	P31930	480 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	PIK3CB	P42338	1070 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	MTHFS	P49914	203 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	C21orf58	P58505	322 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	COBLL1	Q53SF7	1204 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	RAB11FIP4	Q86YS3	637 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	FANCB	Q8NB91	859 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	ABHD11	Q8NFV4	315 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	ZNF212	Q9UDV6	495 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	USP22	Q9UPT9	525 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	FAM50B	Q9Y247	325 aa		5.66	□□□□□ -1.5
CD44-223	ENST00000526553	DRG1	Q9Y295	367 aa	Known RBP	5.66	□□□□□ -1.5
CD44-223	ENST00000526553	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	5.65	□□□□□ -1.5
CD44-223	ENST00000526553	PSMD9	O00233	223 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	CASP5	P51878	434 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	E2F1	Q01094	437 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	ZNF543	Q08ER8	600 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	CCDC142	Q17RM4	750 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	PLAG1	Q6DJT9	500 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	MZT2A	Q6P582	158 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	CCAR1	Q8IX12	1150 aa	Known RBP	5.65	□□□□□ -1.5
CD44-223	ENST00000526553	PJA1	Q8NG27	643 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	IQCD	Q96DY2	449 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	PRR25	Q96S07	402 aa		5.65	□□□□□ -1.5
CD44-223	ENST00000526553	INO80B	Q9C086	356 aa	Predicted RBP	5.65	□□□□□ -1.5

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