RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 ZNF840PA6NDX5 716 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 HOXD11P31277 338 aaPredicted RBP22.16■■□□□ 1.14
VPS28-203ENST00000524521 MRE11P49959 708 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 PDE6CP51160 858 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 MAP3K7CLP57077 242 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 FZD5Q13467 585 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 ITPRIPL2Q3MIP1 535 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 ZNF394Q53GI3 561 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 SCAMP5Q8TAC9 235 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 RIN3Q8TB24 985 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 FBXO32Q969P5 355 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 FAXDC2Q96IV6 333 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 HNRNPABQ99729 332 aaKnown RBP22.16■■□□□ 1.14
VPS28-203ENST00000524521 FAM83CQ9BQN1 747 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 CHORDC1Q9UHD1 332 aaPredicted RBP22.16■■□□□ 1.14
VPS28-203ENST00000524521 COQ4Q9Y3A0 265 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 SPECC1L-ADORA2AF8WAN1 911 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 TNFRSF10BO14763 440 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 BEST1O76090 585 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 FAM200BP0CF97 657 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 MAGEA9P43362 315 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 SLC5A3P53794 718 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 PAK1Q13153 545 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 TRIM68Q6AZZ1 485 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 RALGPS2Q86X27 583 aaPredicted RBP22.15■■□□□ 1.14
VPS28-203ENST00000524521 TRIML1Q8N9V2 468 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 ZMIZ2Q8NF64 920 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 SH3RF2Q8TEC5 729 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 MSANTD3Q96H12 275 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 HEXIM2Q96MH2 286 aaKnown RBP22.15■■□□□ 1.14
VPS28-203ENST00000524521 EBF3Q9H4W6 596 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 LMAN1LQ9HAT1 526 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 CISHQ9NSE2 258 aa22.15■■□□□ 1.14
VPS28-203ENST00000524521 PFKLP17858 780 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 CTHP32929 405 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 RPS9P46781 194 aaKnown RBP22.14■■□□□ 1.13
VPS28-203ENST00000524521 FMO5P49326 533 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 RUNX3Q13761 415 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 MTF1Q14872 753 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 C1orf228Q6PIY5 440 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 FOXR2Q6PJQ5 311 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 ZNF687Q8N1G0 1237 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 TTC39CQ8N584 583 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 PDZD8Q8NEN9 1154 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 ARID3AQ99856 593 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 SRRTQ9BXP5 876 aaKnown RBP22.14■■□□□ 1.13
VPS28-203ENST00000524521 RNF38Q9H0F5 515 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 CSNK1G1Q9HCP0 422 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 HPS4Q9NQG7 708 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 COMMD8Q9NX08 183 aa22.14■■□□□ 1.13
VPS28-203ENST00000524521 MYH10P35580 1976 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 LAMTOR5O43504 91 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 ARSAP15289 507 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 LRMPQ12912 555 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 ZNF77Q15935 545 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 TXNDC11Q6PKC3 985 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 OVCA2Q8WZ82 227 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 JAKMIP2Q96AA8 810 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 DUS2Q9NX74 493 aaKnown RBP22.13■■□□□ 1.13
VPS28-203ENST00000524521 IL37Q9NZH6 218 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 ARHGAP26Q9UNA1 814 aa22.13■■□□□ 1.13
VPS28-203ENST00000524521 USP4Q13107 963 aa22.12■■□□□ 1.13
VPS28-203ENST00000524521 PON2Q15165 354 aa22.12■■□□□ 1.13
VPS28-203ENST00000524521 PDGFRLQ15198 375 aa22.12■■□□□ 1.13
VPS28-203ENST00000524521 PPP1R26Q5T8A7 1209 aaPredicted RBP22.12■■□□□ 1.13
VPS28-203ENST00000524521 CLEC20AQ6ZU45 233 aa22.12■■□□□ 1.13
VPS28-203ENST00000524521 TMEM176AQ96HP8 235 aa22.12■■□□□ 1.13
VPS28-203ENST00000524521 WNT6Q9Y6F9 365 aa22.12■■□□□ 1.13
VPS28-203ENST00000524521 CACNA1IQ9P0X4 2223 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 OTOL1A6NHN0 477 aaPredicted RBP22.11■■□□□ 1.13
VPS28-203ENST00000524521 LEFTY2O00292 366 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 GNA14O95837 355 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 OAS1P00973 400 aaKnown RBP22.11■■□□□ 1.13
VPS28-203ENST00000524521 CHRNB1P11230 501 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 NBL1P41271 181 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 IFNAR2P48551 515 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 RAD23BP54727 409 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 SLC7A9P82251 487 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 ZXDBP98169 803 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 CUL2Q13617 745 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 SLC4A11Q8NBS3 891 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 OSCP1Q8WVF1 389 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 FBXO44Q9H4M3 255 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 SMPD4Q9NXE4 827 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 GMIPQ9P107 970 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 CPQQ9Y646 472 aa22.11■■□□□ 1.13
VPS28-203ENST00000524521 KIF26AQ9ULI4 1882 aaPredicted RBP22.11■■□□□ 1.13
VPS28-203ENST00000524521 FGFR1OPO95684 399 aaKnown RBP22.1■■□□□ 1.13
VPS28-203ENST00000524521 SP9P0CG40 484 aa22.1■■□□□ 1.13
VPS28-203ENST00000524521 MBL2P11226 248 aaPredicted RBP22.1■■□□□ 1.13
VPS28-203ENST00000524521 TCF3P15923 654 aa22.1■■□□□ 1.13
VPS28-203ENST00000524521 CSTF1Q05048 431 aaKnown RBP22.1■■□□□ 1.13
VPS28-203ENST00000524521 CETN1Q12798 172 aa22.1■■□□□ 1.13
VPS28-203ENST00000524521 MTAPQ13126 283 aa22.1■■□□□ 1.13
VPS28-203ENST00000524521 HECTD3Q5T447 861 aa22.1■■□□□ 1.13
VPS28-203ENST00000524521 MAML2Q8IZL2 1156 aaPredicted RBP22.1■■□□□ 1.13
VPS28-203ENST00000524521 LINC00597Q9H2U6 94 aa22.1■■□□□ 1.13
VPS28-203ENST00000524521 CHRDQ9H2X0 955 aa22.1■■□□□ 1.13
VPS28-203ENST00000524521 CLSTN2Q9H4D0 955 aa22.1■■□□□ 1.13
VPS28-203ENST00000524521 FAM124BQ9H5Z6 455 aaPredicted RBP22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms