RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 LRGUKQ96M69 825 aa3.82□□□□□ -1.8
CPNE3-204ENST00000517862 CCDC140Q96MF4 163 aa3.82□□□□□ -1.8
CPNE3-204ENST00000517862 CARD11Q9BXL7 1154 aa3.82□□□□□ -1.8
CPNE3-204ENST00000517862 MS4A5Q9H3V2 200 aa3.82□□□□□ -1.8
CPNE3-204ENST00000517862 C2orf42Q9NWW7 574 aa3.82□□□□□ -1.8
CPNE3-204ENST00000517862 ZBTB21Q9ULJ3 1066 aa3.82□□□□□ -1.8
CPNE3-204ENST00000517862 WNT6Q9Y6F9 365 aa3.82□□□□□ -1.8
CPNE3-204ENST00000517862 LAMA4Q16363 1823 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 CLUHO75153 1309 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 BAZ2BQ9UIF8 2168 aaKnown RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 E2F8A0AVK6 867 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 C2orf71A6NGG8 1288 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 MAN2B1O00754 1011 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 KCNK3O14649 394 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 DCLK1O15075 740 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 KLK10O43240 276 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 SOD2P04179 222 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 FAM87AP0C7U9 286 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 PF4V1P10720 104 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 PLS3P13797 630 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 THPOP40225 353 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 CASRP41180 1078 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 GPR85P60893 370 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 POU4F1Q01851 419 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 KLRC3Q07444 240 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 NMIQ13287 307 aaPredicted RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 ESPL1Q14674 2120 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 SMC1AQ14683 1233 aaKnown RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 ODF1Q14990 250 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 TMEM132BQ14DG7 1078 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 BRD3Q15059 726 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 TRIM71Q2Q1W2 868 aaKnown RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 GFOD2Q3B7J2 385 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 LINC00303Q3SY05 128 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 CYP27C1Q4G0S4 372 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 TMEM177Q53S58 311 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 BEND3Q5T5X7 828 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 NXNQ6DKJ4 435 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 PARM1Q6UWI2 310 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 C15orf39Q6ZRI6 1047 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 ERICH1Q86X53 443 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 RIOX2Q8IUF8 465 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 IFNL3Q8IZI9 196 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 MRPL43Q8N983 215 aaKnown RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 CLRN3Q8NCR9 226 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 MRPS27Q92552 414 aaKnown RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 APBB2Q92870 758 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 GLG1Q92896 1179 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 FUBP3Q96I24 572 aaKnown RBP eCLIP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 SEMA3CQ99985 751 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 WDR6Q9NNW5 1121 aaKnown RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 PDGFCQ9NRA1 345 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 C14orf119Q9NWQ9 140 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 HERC5Q9UII4 1024 aaKnown RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 FBXL7Q9UJT9 491 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 PALD1Q9ULE6 856 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 LZTS1Q9Y250 596 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 ZKSCAN5Q9Y2L8 839 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 ST14Q9Y5Y6 855 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 BACE2Q9Y5Z0 518 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 MAP1AP78559 2803 aaPredicted RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 WDR81Q562E7 1941 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 LOXHD1Q8IVV2 1947 aa3.81□□□□□ -1.8
CPNE3-204ENST00000517862 MTCL1Q9Y4B5 1905 aaKnown RBP3.81□□□□□ -1.8
CPNE3-204ENST00000517862 COL1A2P08123 1366 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 MYLKQ15746 1914 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 MYH2Q9UKX2 1941 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 VWFP04275 2813 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 PTPDC1A2A3K4 754 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 CCDC66A2RUB6 948 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 RNF212BA8MTL3 300 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 K7ENP7 123 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 ETV2O00321 342 aaPredicted RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 AURKAO14965 403 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 EIF3JO75822 258 aaKnown RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 SNUPNO95149 360 aaKnown RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 ATXN1LP0C7T5 689 aaKnown RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 CHRNB1P11230 501 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 CD1EP15812 388 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 CCND1P24385 295 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 ZEB1P37275 1124 aaPredicted RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 MECP2P51608 486 aaKnown RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 NEK3P51956 506 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 KPNA1P52294 538 aaPredicted RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 INHBCP55103 352 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 TMEM62Q0P6H9 643 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 OS9Q13438 667 aaPredicted RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 DCTN1Q14203 1278 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 RTP5Q14D33 572 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 SMAD1Q15797 465 aaKnown RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 INF2Q27J81 1249 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 TBC1D25Q3MII6 688 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 CCDC157Q569K6 752 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 CREB3L3Q68CJ9 461 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 MBLAC2Q68D91 279 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 FSTL4Q6MZW2 842 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 INO80CQ6PI98 192 aaPredicted RBP3.8□□□□□ -1.8
CPNE3-204ENST00000517862 TSHZ1Q6ZSZ6 1077 aa3.8□□□□□ -1.8
CPNE3-204ENST00000517862 GET4Q7L5D6 327 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms