RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 SNX25Q9H3E2 840 aa7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 SOX17Q9H6I2 414 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 UTP6Q9NYH9 597 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 WHRNQ9P202 907 aa7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 SLC17A6Q9P2U8 582 aa7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 TAGLN3Q9UI15 199 aa7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 MTO1Q9Y2Z2 717 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 ZNF536O15090 1300 aa7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 TNRQ92752 1358 aa7.56□□□□□ -1.2
LIMCH1-207ENST00000508466 ARHGAP10A1A4S6 786 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 NRP1O14786 923 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 ATP2A1O14983 1001 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TAS2R40P59535 323 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 FPGSQ05932 587 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SNAPC2Q13487 334 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SPIDRQ14159 915 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PRR16Q569H4 304 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PPM1LQ5SGD2 360 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SLC9A4Q6AI14 798 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PPM1NQ8N819 430 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 POMGNT1Q8WZA1 660 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 CFAP57Q96MR6 1250 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 OSBPL6Q9BZF3 934 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 NYXQ9GZU5 481 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 KMT5AQ9NQR1 393 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PNPOQ9NVS9 261 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SFMBT1Q9UHJ3 866 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 LGALS13Q9UHV8 139 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 DMTF1Q9Y222 760 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SLC27A5Q9Y2P5 690 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 N6AMT1Q9Y5N5 214 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 DGKBQ9Y6T7 804 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 BCL9O00512 1426 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 A0A0A6YYK5 440 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 STRNO43815 780 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 GUCY1B2O75343 617 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 ALDH2P05091 517 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 GNAO1P09471 354 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 FAM58BPP0C7Q3 252 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PABPC1P11940 636 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 RAP1GDS1P52306 607 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SEPT6Q14141 434 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 GRM2Q14416 872 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 NR1D2Q14995 579 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 NEDD8Q15843 81 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PPP2R5EQ16537 467 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 HSP90AA5PQ58FG0 334 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 FAM209AQ5JX71 171 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 MROH9Q5TGP6 573 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TXNRD3NBQ6F5E7 133 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SNRNP48Q6IEG0 339 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 FRMD7Q6ZUT3 714 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 DSG4Q86SJ6 1040 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SLC15A4Q8N697 577 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TTC13Q8NBP0 860 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 FBXO36Q8NEA4 188 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 DDHD1Q8NEL9 900 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 C12orf43Q96C57 262 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PPP1R14BQ96C90 147 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 RPL10LQ96L21 214 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SETDB2Q96T68 719 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PKP2Q99959 881 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 ISCA1Q9BUE6 129 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 WNT8AQ9H1J5 351 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PALMDQ9NP74 551 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 COQ3Q9NZJ6 369 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 KIAA1522Q9P206 1035 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 HESX1Q9UBX0 185 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 ASTN1O14525 1302 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 NALCNQ8IZF0 1738 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 BAZ2AQ9UIF9 1905 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 FAM86B1E9PN63 330 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TNPO2O14787 897 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TGFB1I1O43294 461 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TPST1O60507 370 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 ESRRBO95718 433 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 CKMT2P17540 419 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 GLRA2P23416 452 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 ARPP19P56211 112 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 CHRNDQ07001 517 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 CAMK2BQ13554 666 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SHROOM1Q2M3G4 852 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SMTNL2Q2TAL5 461 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TIGD2Q4W5G0 525 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 KCNT1Q5JUK3 1230 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PPP2R2DQ66LE6 453 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TATDN1Q6P1N9 297 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 CYP2R1Q6VVX0 501 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TMEM26Q6ZUK4 368 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 GET4Q7L5D6 327 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 MIER3Q7Z3K6 550 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 KRT25Q7Z3Z0 450 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 CATSPER3Q86XQ3 398 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TPH2Q8IWU9 490 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TTC25Q96NG3 672 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PGLYRP2Q96PD5 576 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 LRRC19Q9H756 370 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PLGRKTQ9HBL7 147 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 TIMMDC1Q9NPL8 285 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms