RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 PTPRDP23468 1912 aa18.52■□□□□ 0.56
COL9A1-210ENST00000493682 MAP1BP46821 2468 aaKnown RBP18.51■□□□□ 0.55
COL9A1-210ENST00000493682 LAMA1P25391 3075 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 CNOT1A5YKK6 2376 aaKnown RBP18.51■□□□□ 0.55
COL9A1-210ENST00000493682 SCAMP3O14828 347 aaKnown RBP18.51■□□□□ 0.55
COL9A1-210ENST00000493682 KCNK5O95279 499 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 OAS1P00973 400 aaKnown RBP18.51■□□□□ 0.55
COL9A1-210ENST00000493682 FAM163BP0C2L3 166 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 CYP2J2P51589 502 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 AMPD3Q01432 767 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 CYP24A1Q07973 514 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 DHCR24Q15392 516 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 WDR72Q3MJ13 1102 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 TDRD10Q5VZ19 366 aaKnown RBP18.51■□□□□ 0.55
COL9A1-210ENST00000493682 PMS2CLQ68D20 193 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 ANO7Q6IWH7 933 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 CNNM4Q6P4Q7 775 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 C11orf74Q86VG3 221 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 SFTPA1Q8IWL2 248 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 CCDC127Q96BQ5 260 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 DHX58Q96C10 678 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 CNOT6LQ96LI5 555 aaKnown RBP18.51■□□□□ 0.55
COL9A1-210ENST00000493682 FNBP1Q96RU3 617 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 ZNF518BQ9C0D4 1074 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 DPEP3Q9H4B8 488 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 CFAP97Q9P2B7 532 aa18.51■□□□□ 0.55
COL9A1-210ENST00000493682 CLDN5O00501 218 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 SLC9A3R1O14745 358 aaPredicted RBP18.5■□□□□ 0.55
COL9A1-210ENST00000493682 CLIC2O15247 247 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 SPTLC2O15270 562 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 STX6O43752 255 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 BCKDHBP21953 392 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 SLC6A11P48066 632 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 TNNC1P63316 161 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 MRPS21P82921 87 aaKnown RBP18.5■□□□□ 0.55
COL9A1-210ENST00000493682 MESP2Q0VG99 397 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 CRY1Q16526 586 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 FAM26FQ5R3K3 315 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 PSAPL1Q6NUJ1 521 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 MDGA1Q8NFP4 955 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 SCFD1Q8WVM8 642 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 ZNF516Q92618 1163 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 B3GNT5Q9BYG0 378 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 ELOVL4Q9GZR5 314 aa18.5■□□□□ 0.55
COL9A1-210ENST00000493682 TFIP11Q9UBB9 837 aaKnown RBP18.5■□□□□ 0.55
COL9A1-210ENST00000493682 LNP1A1A4G5 178 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 C4orf47A7E2U8 309 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 PPP6R2O75170 966 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 CENPBP07199 599 aaPredicted RBP18.49■□□□□ 0.55
COL9A1-210ENST00000493682 CHRM1P11229 460 aaPredicted RBP18.49■□□□□ 0.55
COL9A1-210ENST00000493682 HNRNPLP14866 589 aaKnown RBP eCLIP18.49■□□□□ 0.55
COL9A1-210ENST00000493682 MYL6P60660 151 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 RHBDF2Q6PJF5 856 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 TMEM92Q6UXU6 159 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 NELFCDQ8IXH7 590 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 IQUBQ8NA54 791 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 XXYLT1Q8NBI6 393 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 B3GALNT2Q8NCR0 500 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 SLITRK1Q96PX8 696 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 PNKPQ96T60 521 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 C7orf25Q9BPX7 421 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 GZF1Q9H116 711 aaPredicted RBP18.49■□□□□ 0.55
COL9A1-210ENST00000493682 XYLT2Q9H1B5 865 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 NXF1Q9UBU9 619 aaKnown RBP18.49■□□□□ 0.55
COL9A1-210ENST00000493682 UBE4BO95155 1302 aa18.49■□□□□ 0.55
COL9A1-210ENST00000493682 A8MXQ7 604 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 KHNYNO15037 678 aaKnown RBP18.48■□□□□ 0.55
COL9A1-210ENST00000493682 STAU1O95793 577 aaKnown RBP18.48■□□□□ 0.55
COL9A1-210ENST00000493682 MBL2P11226 248 aaPredicted RBP18.48■□□□□ 0.55
COL9A1-210ENST00000493682 YWHAQP27348 245 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 SNRPFP62306 86 aaKnown RBP18.48■□□□□ 0.55
COL9A1-210ENST00000493682 EHHADHQ08426 723 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 IFRD2Q12894 506 aaPredicted RBP18.48■□□□□ 0.55
COL9A1-210ENST00000493682 TRPC3Q13507 836 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 SHC4Q6S5L8 630 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 C12orf40Q86WS4 652 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 TTC30AQ86WT1 665 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 DDX42Q86XP3 938 aaKnown RBP eCLIP18.48■□□□□ 0.55
COL9A1-210ENST00000493682 NUP93Q8N1F7 819 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 ALLCQ8N6M5 410 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 IL17RCQ8NAC3 791 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 OLIG1Q8TAK6 271 aa18.48■□□□□ 0.55
COL9A1-210ENST00000493682 KAT7O95251 611 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 KLF8O95600 359 aaPredicted RBP18.47■□□□□ 0.55
COL9A1-210ENST00000493682 ADH1CP00326 375 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 APODP05090 189 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 ADH5P11766 374 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 ATICP31939 592 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 TIE1P35590 1138 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 EIF2DP41214 584 aaKnown RBP18.47■□□□□ 0.55
COL9A1-210ENST00000493682 NOVA1P51513 510 aaKnown RBP18.47■□□□□ 0.55
COL9A1-210ENST00000493682 UNC13DQ70J99 1090 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 CYP2U1Q7Z449 544 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 TXNDC5Q8NBS9 432 aaKnown RBP18.47■□□□□ 0.55
COL9A1-210ENST00000493682 KCNK16Q96T55 309 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 ARHGEF4Q9NR80 690 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 USP24Q9UPU5 2620 aa18.47■□□□□ 0.55
COL9A1-210ENST00000493682 ABCA7Q8IZY2 2146 aa18.46■□□□□ 0.55
COL9A1-210ENST00000493682 A0A0A0MRY4 1105 aa18.46■□□□□ 0.55
COL9A1-210ENST00000493682 E2F8A0AVK6 867 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms