RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 WDTC1Q8N5D0 677 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 IPO4Q8TEX9 1081 aaKnown RBP16.61■□□□□ 0.25
HPS4-216ENST00000493455 SLC35F5Q8WV83 523 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 PABPC5Q96DU9 382 aaKnown RBP16.61■□□□□ 0.25
HPS4-216ENST00000493455 CCDC42Q96M95 316 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 C11orf70Q9BRQ4 267 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 PRKD2Q9BZL6 878 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 LHX5Q9H2C1 402 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 NHEJ1Q9H9Q4 299 aaPredicted RBP16.61■□□□□ 0.25
HPS4-216ENST00000493455 ZDHHC7Q9NXF8 308 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 CLEC1BQ9P126 229 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 TJP2Q9UDY2 1190 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 ADAMTS1Q9UHI8 967 aa16.61■□□□□ 0.25
HPS4-216ENST00000493455 HHLA1C9JL84 531 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 E5RJQ4 531 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 DDX3XO00571 662 aaKnown RBP eCLIP16.6■□□□□ 0.25
HPS4-216ENST00000493455 LSM8O95777 96 aaKnown RBP16.6■□□□□ 0.25
HPS4-216ENST00000493455 ABL1P00519 1130 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 C1RP00736 705 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 CYP1A1P04798 512 aaPredicted RBP16.6■□□□□ 0.25
HPS4-216ENST00000493455 HNRNPA1P09651 372 aaKnown RBP eCLIP16.6■□□□□ 0.25
HPS4-216ENST00000493455 KCNA5P22460 613 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 NTHL1P78549 312 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 GFPT1Q06210 699 aaPredicted RBP16.6■□□□□ 0.25
HPS4-216ENST00000493455 MEA1Q16626 185 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 OR6B2Q6IFH4 312 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 SYCE2Q6PIF2 218 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 CYP26C1Q6V0L0 522 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 TRIM72Q6ZMU5 477 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 MMS22LQ6ZRQ5 1243 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 ERICH1Q86X53 443 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 MAFAQ8NHW3 353 aaPredicted RBP16.6■□□□□ 0.25
HPS4-216ENST00000493455 NDRG1Q92597 394 aaKnown RBP16.6■□□□□ 0.25
HPS4-216ENST00000493455 FBXO32Q969P5 355 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 PPP1R13BQ96KQ4 1090 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 SPATA17Q96L03 361 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 CPXM1Q96SM3 734 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 BAG1Q99933 345 aaPredicted RBP16.6■□□□□ 0.25
HPS4-216ENST00000493455 ULBP1Q9BZM6 244 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 ZNF334Q9HCZ1 680 aaPredicted RBP16.6■□□□□ 0.25
HPS4-216ENST00000493455 ASAH2Q9NR71 780 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 SPTLC3Q9NUV7 552 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 TAS2R14Q9NYV8 317 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 OBSL1O75147 1896 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 CDH23Q9H251 3354 aa16.6■□□□□ 0.25
HPS4-216ENST00000493455 SOWAHDA6NJG2 315 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 RTN3O95197 1032 aaPredicted RBP16.59■□□□□ 0.25
HPS4-216ENST00000493455 ERBB2P04626 1255 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 USP17L7P0C7H9 530 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 PTPN2P17706 415 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 YWHAQP27348 245 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 HOXA9P31269 272 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 LTBRP36941 435 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 KIF11P52732 1056 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 CTC1Q2NKJ3 1217 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 PTPN20Q4JDL3 420 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 CCDC122Q5T0U0 273 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 TMEM184AQ6ZMB5 413 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 MSANTD4Q8NCY6 345 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 OLIG1Q8TAK6 271 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 CLEC4CQ8WTT0 213 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 PSMG2Q969U7 264 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 ZNF707Q96C28 371 aaPredicted RBP16.59■□□□□ 0.25
HPS4-216ENST00000493455 SYT11Q9BT88 431 aa16.59■□□□□ 0.25
HPS4-216ENST00000493455 UBE2ZQ9H832 354 aaPredicted RBP16.59■□□□□ 0.25
HPS4-216ENST00000493455 DNMT3BQ9UBC3 853 aaKnown RBP16.59■□□□□ 0.25
HPS4-216ENST00000493455 A0A087X0T9 212 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 GOLGA8SH3BPF8 625 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 TNFRSF10BO14763 440 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 FAM228BP0C875 321 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 UNGP13051 313 aaPredicted RBP16.58■□□□□ 0.24
HPS4-216ENST00000493455 GJA1P17302 382 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 GABRR2P28476 465 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 ACADSBP45954 432 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 CCDC173Q0VFZ6 552 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 TAF10Q12962 218 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 PABPC1LQ4VXU2 614 aaKnown RBP16.58■□□□□ 0.24
HPS4-216ENST00000493455 CES5AQ6NT32 575 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 PDZD4Q76G19 769 aaPredicted RBP16.58■□□□□ 0.24
HPS4-216ENST00000493455 HSFY1Q96LI6 401 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 GCNAQ96QF7 691 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 FBXO44Q9H4M3 255 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 PNPLA8Q9NP80 782 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 ADAM22Q9P0K1 906 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 GMIPQ9P107 970 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 CD207Q9UJ71 328 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 ASB3Q9Y575 518 aa16.58■□□□□ 0.24
HPS4-216ENST00000493455 SSU72P8A0A1W2PR75 194 aa16.57■□□□□ 0.24
HPS4-216ENST00000493455 ATMINO43313 823 aaPredicted RBP16.57■□□□□ 0.24
HPS4-216ENST00000493455 GABBR2O75899 941 aa16.57■□□□□ 0.24
HPS4-216ENST00000493455 ZBED1O96006 694 aa16.57■□□□□ 0.24
HPS4-216ENST00000493455 RHOP08100 348 aa16.57■□□□□ 0.24
HPS4-216ENST00000493455 HMGA1P17096 107 aaKnown RBP16.57■□□□□ 0.24
HPS4-216ENST00000493455 HOXB8P17481 243 aaPredicted RBP16.57■□□□□ 0.24
HPS4-216ENST00000493455 ABCB4P21439 1286 aa16.57■□□□□ 0.24
HPS4-216ENST00000493455 CDH5P33151 784 aaPredicted RBP16.57■□□□□ 0.24
HPS4-216ENST00000493455 CYP4F8P98187 520 aa16.57■□□□□ 0.24
HPS4-216ENST00000493455 CENPCQ03188 943 aa16.57■□□□□ 0.24
HPS4-216ENST00000493455 MAPK8IP2Q13387 824 aaPredicted RBP16.57■□□□□ 0.24
HPS4-216ENST00000493455 MTF1Q14872 753 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms