RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CYP1B1Q16678 543 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 DCUN1D2Q6PH85 259 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.78□□□□□ -0.367e-6■□□□□ 8.4
HDAC6-230ENST00000488543 KATNAL2Q8IYT4 538 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 PLCD3Q8N3E9 789 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 FAM49BQ9NUQ9 324 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 SLC38A7Q9NVC3 462 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 WDR35Q9P2L0 1181 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 LAMA3Q16787 3333 aa12.77□□□□□ -0.36
HDAC6-230ENST00000488543 GOLGA6L10A0A0M3HER8 536 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 E7EVH7 732 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 H0YGN5 161 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 ATXN8OSP0DMR3 200 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 SKIP12755 728 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 UPP1Q16831 310 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 TTC27Q6P3X3 843 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 ANKS1BQ7Z6G8 1248 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 TMCO2Q7Z6W1 182 aaPredicted RBP12.77□□□□□ -0.37
HDAC6-230ENST00000488543 CRYBG2Q8N1P7 616 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 MREGQ8N565 214 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 ZNF473Q8WTR7 871 aaKnown RBP12.77□□□□□ -0.37
HDAC6-230ENST00000488543 TMBIM4Q9HC24 238 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 METTL5Q9NRN9 209 aaKnown RBP12.77□□□□□ -0.37
HDAC6-230ENST00000488543 NFS1Q9Y697 457 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 TSC2P49815 1807 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 A8MXQ7 604 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 GABBR2O75899 941 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 B3GAT3O94766 335 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 UPP2O95045 317 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 CXCL10P02778 98 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 KRT3P12035 628 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 CSF2RAP15509 400 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 WARSP23381 471 aaKnown RBP12.77□□□□□ -0.37
HDAC6-230ENST00000488543 PTGIRP43119 386 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 PIGHQ14442 188 aaPredicted RBP12.77□□□□□ -0.37
HDAC6-230ENST00000488543 PPP2R5EQ16537 467 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 CCDC142Q17RM4 750 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 GLB1LQ6UWU2 654 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 UHMK1Q8TAS1 419 aaKnown RBP12.77□□□□□ -0.37
HDAC6-230ENST00000488543 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.77□□□□□ -0.37
HDAC6-230ENST00000488543 DNAJB4Q9UDY4 337 aa12.77□□□□□ -0.37
HDAC6-230ENST00000488543 A0A087WUV0 522 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SMIM23A6NLE4 172 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 CYB561D2O14569 222 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 GNL1P36915 607 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-230ENST00000488543 MDH1P40925 334 aaKnown RBP12.76□□□□□ -0.37
HDAC6-230ENST00000488543 BRCC3P46736 316 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 ATP13A4Q4VNC1 1196 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 WSCD1Q658N2 575 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 CD300LGQ6UXG3 332 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 ADGRF2Q8IZF7 708 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 CRIPAKQ8N1N5 446 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 TOP6BLQ8N6T0 577 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 ARFGAP1Q8N6T3 406 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 C12orf50Q8NA57 414 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-230ENST00000488543 APPL2Q8NEU8 664 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 CCDC26Q8TAB7 109 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 FNIP1Q8TF40 1166 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SEC14L1Q92503 715 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SYNCQ9H7C4 482 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 UBN1Q9NPG3 1134 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 TMEM161AQ9NX61 479 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.76□□□□□ -0.37
HDAC6-230ENST00000488543 PCDHB7Q9Y5E2 793 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 E5RJQ4 531 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SETSIPP0DME0 302 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 ACRP10323 421 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 DHX9Q08211 1270 aaKnown RBP12.76□□□□□ -0.37
HDAC6-230ENST00000488543 GRIK3Q13003 919 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 TUSC3Q13454 348 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 QPCTQ16769 361 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 TIGD5Q53EQ6 642 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 NOMO2Q5JPE7 1267 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 RNF187Q5TA31 235 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-230ENST00000488543 LRRC38Q5VT99 294 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 TXNRD3NBQ6F5E7 133 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 TRNP1Q6NT89 227 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 PMF1Q6P1K2 205 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 FAM183BPQ6ZVS7 135 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 NLRP14Q86W24 1093 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 EMC1Q8N766 993 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 EXD1Q8NHP7 514 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SLC35F5Q8WV83 523 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 PIWIL1Q96J94 861 aaKnown RBP12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SENP8Q96LD8 212 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 CCT8L2Q96SF2 557 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SLC4A5Q9BY07 1137 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 EPN3Q9H201 632 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 SNX25Q9H3E2 840 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 TBC1D13Q9NVG8 400 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 ATP8A1Q9Y2Q0 1164 aa12.76□□□□□ -0.37
HDAC6-230ENST00000488543 PIK3R2O00459 728 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 HUS1O60921 280 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 ATP2C2O75185 946 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 CCDC130P13994 396 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 ACAT1P24752 427 aaKnown RBP12.75□□□□□ -0.37
HDAC6-230ENST00000488543 PSMA2P25787 234 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 CHRNA3P32297 505 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 GJC1P36383 396 aa12.75□□□□□ -0.37
HDAC6-230ENST00000488543 SSR1P43307 286 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms