RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 CLUHO75153 1309 aa27.31■■□□□ 1.96
HLA-C-208ENST00000487245 TRUB2O95900 331 aaKnown RBP27.31■■□□□ 1.96
HLA-C-208ENST00000487245 KRT15P19012 456 aa27.31■■□□□ 1.96
HLA-C-208ENST00000487245 CTCFP49711 727 aaPredicted RBP27.31■■□□□ 1.96
HLA-C-208ENST00000487245 GTF2A2P52657 109 aa27.31■■□□□ 1.96
HLA-C-208ENST00000487245 ORC1Q13415 861 aa27.31■■□□□ 1.96
HLA-C-208ENST00000487245 NCAPGQ9BPX3 1015 aa27.31■■□□□ 1.96
HLA-C-208ENST00000487245 NT5C1AQ9BXI3 368 aa27.31■■□□□ 1.96
HLA-C-208ENST00000487245 RRN3P2A6NIE6 340 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 SPAG7O75391 227 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 SNAI1O95863 264 aaPredicted RBP27.3■■□□□ 1.96
HLA-C-208ENST00000487245 MIPP30301 263 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 ZNF143P52747 638 aaPredicted RBP27.3■■□□□ 1.96
HLA-C-208ENST00000487245 NDST1P52848 882 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 KCNJ2P63252 427 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 CBLBQ13191 982 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 DUSP28Q4G0W2 176 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 EMC1Q8N766 993 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 KLHL29Q96CT2 875 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 KIF12Q96FN5 646 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 CNPY3Q9BT09 278 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 RSAD1Q9HA92 442 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 GGT7Q9UJ14 662 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 MCM8Q9UJA3 840 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 IGF2BP3O00425 579 aaKnown RBP eCLIP27.3■■□□□ 1.96
HLA-C-208ENST00000487245 IFNB1P01574 187 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 EZRP15311 586 aaKnown RBP27.3■■□□□ 1.96
HLA-C-208ENST00000487245 YARSP54577 528 aaKnown RBP27.3■■□□□ 1.96
HLA-C-208ENST00000487245 SMTNL2Q2TAL5 461 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 FAM102AQ5T9C2 384 aaPredicted RBP27.3■■□□□ 1.96
HLA-C-208ENST00000487245 USP18Q9UMW8 372 aa27.3■■□□□ 1.96
HLA-C-208ENST00000487245 EDF1O60869 148 aaKnown RBP27.29■■□□□ 1.96
HLA-C-208ENST00000487245 ATP5HO75947 161 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 ZWINTO95229 277 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 GPD1P21695 349 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 RPL22P35268 128 aaKnown RBP27.29■■□□□ 1.96
HLA-C-208ENST00000487245 ADCY1Q08828 1119 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 KLHL38Q2WGJ6 581 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 MAP1SQ66K74 1059 aaPredicted RBP27.29■■□□□ 1.96
HLA-C-208ENST00000487245 ANKRD23Q86SG2 305 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 DPP9Q86TI2 863 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 RFX6Q8HWS3 928 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 ANKLE1Q8NAG6 615 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 RSAD2Q8WXG1 361 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 ACSS3Q9H6R3 686 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 BAIAP2L1Q9UHR4 511 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 PHTF1Q9UMS5 762 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 USH1CQ9Y6N9 552 aa27.29■■□□□ 1.96
HLA-C-208ENST00000487245 BTBD19C9JJ37 291 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 APOC4-APOC2K7ER74 178 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 APOC2P02655 101 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 DGKDQ16760 1214 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 KCNT1Q5JUK3 1230 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 SPDYAQ5MJ70 313 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 MARCH8Q5T0T0 291 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 IQSEC1Q6DN90 963 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 ADGRD1Q6QNK2 874 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 PNMA8AQ86V59 439 aaPredicted RBP27.28■■□□□ 1.96
HLA-C-208ENST00000487245 PYROXD1Q8WU10 500 aa27.28■■□□□ 1.96
HLA-C-208ENST00000487245 MMP3P08254 477 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 DYNLT1P63172 113 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 OR6J1Q8NGC5 347 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 UBA3Q8TBC4 463 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 FBF1Q8TES7 1133 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 MS4A4AQ96JQ5 239 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 TXLNGQ9NUQ3 528 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 PCSK1NQ9UHG2 260 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP27.27■■□□□ 1.96
HLA-C-208ENST00000487245 C11orf97A0A1B0GVM6 126 aaPredicted RBP27.27■■□□□ 1.96
HLA-C-208ENST00000487245 SETSIPP0DME0 302 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 YBX3P16989 372 aaKnown RBP eCLIP27.27■■□□□ 1.96
HLA-C-208ENST00000487245 RPA3P35244 121 aaPredicted RBP27.27■■□□□ 1.96
HLA-C-208ENST00000487245 MAP2K2P36507 400 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 GDF10P55107 478 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 SNX16P57768 344 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 PCBP1Q15365 356 aaKnown RBP eCLIP27.27■■□□□ 1.965e-7■■□□□ 14.4
HLA-C-208ENST00000487245 ANKRD22Q5VYY1 191 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 PAIP2Q9BPZ3 127 aaKnown RBP27.27■■□□□ 1.96
HLA-C-208ENST00000487245 ABHD16BQ9H3Z7 469 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 KIF9Q9HAQ2 790 aa27.27■■□□□ 1.96
HLA-C-208ENST00000487245 CCL15-CCL14A0A0B4J2E2 113 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 ENDOD1O94919 500 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 UNC5CO95185 931 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 CA4P22748 312 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 PDE4CQ08493 712 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 TFDP2Q14188 446 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 SLC1A5Q15758 541 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 CCL15Q16663 113 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 FAM47CQ5HY64 1035 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 HP1BP3Q5SSJ5 553 aaPredicted RBP27.26■■□□□ 1.95
HLA-C-208ENST00000487245 FNBP1LQ5T0N5 605 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 OR6B2Q6IFH4 312 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 FAM47EQ6ZV65 393 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 TMEM130Q8N3G9 435 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 LRRC8CQ8TDW0 803 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 ALKBH8Q96BT7 664 aaKnown RBP27.26■■□□□ 1.95
HLA-C-208ENST00000487245 MAK16Q9BXY0 300 aaKnown RBP27.26■■□□□ 1.95
HLA-C-208ENST00000487245 GCOM2Q9BZD3 368 aaPredicted RBP27.26■■□□□ 1.95
HLA-C-208ENST00000487245 TSPAN16Q9UKR8 245 aa27.26■■□□□ 1.95
HLA-C-208ENST00000487245 GRID1Q9ULK0 1009 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms