RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 AVPR1AP37288 418 aa17.02■□□□□ 0.32
COL7A1-210ENST00000487017 CREG2Q8IUH2 290 aa17.02■□□□□ 0.32
COL7A1-210ENST00000487017 C4orf19Q8IY42 314 aa17.02■□□□□ 0.32
COL7A1-210ENST00000487017 FAM172AQ8WUF8 416 aa17.02■□□□□ 0.32
COL7A1-210ENST00000487017 PTPN7P35236 360 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 CAP2P40123 477 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 MRPS15P82914 257 aaKnown RBP17.02■□□□□ 0.31
COL7A1-210ENST00000487017 LAMC2Q13753 1193 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 DENND1BQ6P3S1 775 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 BNC2Q6ZN30 1099 aaPredicted RBP17.02■□□□□ 0.31
COL7A1-210ENST00000487017 UNC45BQ8IWX7 931 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 APBB2Q92870 758 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 PCDH9Q9HC56 1237 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 RRN3P2A6NIE6 340 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 RPL21P46778 160 aaKnown RBP17.02■□□□□ 0.31
COL7A1-210ENST00000487017 CASP7P55210 303 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 PCNX4Q63HM2 1172 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 CCDC126Q96EE4 140 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 LRRC40Q9H9A6 602 aa17.02■□□□□ 0.31
COL7A1-210ENST00000487017 RUVBL2Q9Y230 463 aaKnown RBP17.02■□□□□ 0.31
COL7A1-210ENST00000487017 SPDYE5A6NIY4 337 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 M0R3G1 203 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SKAP2O75563 359 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SOAT2O75908 522 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 AKT1P31749 480 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SPDYE7PQ495Y7 208 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 WDR49Q8IV35 697 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 MCOLN2Q8IZK6 566 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 ZDHHC15Q96MV8 337 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 PRPF18Q99633 342 aaKnown RBP17.01■□□□□ 0.31
COL7A1-210ENST00000487017 WDCPQ9H6R7 721 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SEPT3Q9UH03 358 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 ETFBP38117 255 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 NFIAQ12857 509 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 HORMAD1Q86X24 394 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 CD302Q8IX05 232 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SNX31Q8N9S9 440 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 FOPNLQ96NB1 174 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 IL17RBQ9NRM6 502 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 CLCA2Q9UQC9 943 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 ATP11BQ9Y2G3 1177 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SV2AQ7L0J3 742 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 RAB42Q8N4Z0 105 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 GTF3C2Q8WUA4 911 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-210ENST00000487017 CNPY3Q9BT09 278 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 GPATCH2LQ9NWQ4 482 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 DDIT4Q9NX09 232 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SHOC2Q9UQ13 582 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 V9GYQ6 96 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 PMPCBO75439 489 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 POU4F1Q01851 419 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 C1QBPQ07021 282 aaKnown RBP17.01■□□□□ 0.31
COL7A1-210ENST00000487017 ABRAQ8N0Z2 381 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 KCTD10Q9H3F6 313 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 TRPC7Q9HCX4 862 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 TMEM161AQ9NX61 479 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 POLLQ9UGP5 575 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 LSM7Q9UK45 103 aaKnown RBP17.01■□□□□ 0.31
COL7A1-210ENST00000487017 AAR2Q9Y312 384 aaKnown RBP17.01■□□□□ 0.31
COL7A1-210ENST00000487017 TECPR2O15040 1411 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 ASMTLO95671 621 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 RALBP11234 206 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 VCAM1P19320 739 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 GRK2P25098 689 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SKOR1P84550 965 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 SNAPC2Q13487 334 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 DGKDQ16760 1214 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 NT5DC3Q86UY8 548 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 PIK3R5Q8WYR1 880 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 HIC2Q96JB3 615 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 AGO4Q9HCK5 861 aaKnown RBP17.01■□□□□ 0.31
COL7A1-210ENST00000487017 DYRK4Q9NR20 520 aa17.01■□□□□ 0.31
COL7A1-210ENST00000487017 CHRM3P20309 590 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 ADRM1Q16186 407 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 SH3RF1Q7Z6J0 888 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 INPP5DQ92835 1189 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 CISHQ9NSE2 258 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 SEL1L3Q68CR1 1132 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 ACOT1Q86TX2 421 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 BTN2A2Q8WVV5 523 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 MEGF6O75095 1541 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 MAP2K7O14733 419 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 FKBP6O75344 327 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 SUPT7LO94864 414 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 WDR47O94967 919 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 LRRC74AQ0VAA2 488 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 ZRANB3Q5FWF4 1079 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 PKN3Q6P5Z2 889 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 UBE2OQ9C0C9 1292 aaKnown RBP17■□□□□ 0.31
COL7A1-210ENST00000487017 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17■□□□□ 0.31
COL7A1-210ENST00000487017 TWF1Q12792 350 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 SLC9A5Q14940 896 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 ANKS3Q6ZW76 656 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 ZNF786Q8N393 782 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 STX19Q8N4C7 294 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 SEPT5Q99719 369 aaPredicted RBP17■□□□□ 0.31
COL7A1-210ENST00000487017 DEFB129Q9H1M3 183 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 VPS9D1Q9Y2B5 631 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 PCDHA3Q9Y5H8 950 aa17■□□□□ 0.31
COL7A1-210ENST00000487017 ZCCHC18P0CG32 403 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms