RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 COL20A1Q9P218 1284 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 DNMT3BQ9UBC3 853 aaKnown RBP4.82□□□□□ -1.64
VPS41-213ENST00000485955 RNF7Q9UBF6 113 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 CDY1Q9Y6F8 540 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 TPP1O14773 563 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 MARCH6O60337 910 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 EXOC3O60645 756 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 PRR35P0CG20 571 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 CYP2D6P10635 497 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 MYF5P13349 255 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 BCAT1P54687 386 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 RPS16P62249 146 aaKnown RBP4.81□□□□□ -1.64
VPS41-213ENST00000485955 SSBP2P81877 361 aaPredicted RBP4.81□□□□□ -1.64
VPS41-213ENST00000485955 CCNIQ14094 377 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 SRSF7Q16629 238 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS41-213ENST00000485955 KIAA0753Q2KHM9 967 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 KIAA1614Q5VZ46 1190 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 KIRREL2Q6UWL6 708 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 TRIM72Q6ZMU5 477 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 SPARTQ8N0X7 666 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 LRTOMTQ8WZ04 291 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 ZBTB45Q96K62 511 aaPredicted RBP4.81□□□□□ -1.64
VPS41-213ENST00000485955 STK31Q9BXU1 1019 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 LPAR3Q9UBY5 353 aa4.81□□□□□ -1.64
VPS41-213ENST00000485955 AFF4Q9UHB7 1163 aaKnown RBP4.81□□□□□ -1.64
VPS41-213ENST00000485955 LOC102723971A0A1B0GUV8 181 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 TCRBV5S1A1TA0A578 114 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 SRGAP2O75044 1071 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 RASSF9O75901 435 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 RASAL1O95294 804 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 HRGP04196 525 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 PRKCBP05771 671 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 DLDP09622 509 aaKnown RBP4.8□□□□□ -1.64
VPS41-213ENST00000485955 IL1R1P14778 569 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 UQCRC1P31930 480 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 ALDH5A1P51649 535 aaPredicted RBP4.8□□□□□ -1.64
VPS41-213ENST00000485955 ITGA8P53708 1063 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 PSG6Q00889 435 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 MTX3Q5HYI7 312 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 CERCAMQ5T4B2 595 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 ZNF626Q68DY1 528 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 CYB5RLQ6IPT4 315 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 C1QL2Q7Z5L3 287 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 ANKRD13AQ8IZ07 590 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 TERB1Q8NA31 727 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 PNLDC1Q8NA58 520 aaKnown RBP4.8□□□□□ -1.64
VPS41-213ENST00000485955 TTC8Q8TAM2 541 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 RSPRY1Q96DX4 576 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 APIPQ96GX9 242 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 RITA1Q96K30 269 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 PPP1R9BQ96SB3 815 aa4.8□□□□□ -1.64
VPS41-213ENST00000485955 DRG1Q9Y295 367 aaKnown RBP4.8□□□□□ -1.64
VPS41-213ENST00000485955 FRMPD2Q68DX3 1309 aaPredicted RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 MBD3L4A6NDZ8 208 aaPredicted RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 MBD3L3A6NE82 208 aaPredicted RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 AGPSO00116 658 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 GOLIM4O00461 696 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 ADAMTS3O15072 1205 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 RRP9O43818 475 aaKnown RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 PMPCBO75439 489 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 MAP4K4O95819 1239 aaPredicted RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 ZBED1O96006 694 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 FGAP02671 866 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 HGFP14210 728 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 KELP23276 732 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 KLRC1P26715 233 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 GKP32189 559 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 PTDSS1P48651 473 aaKnown RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 ZNF81P51508 661 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 CACNB3P54284 484 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 GBX1Q14549 363 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 INSCQ1MX18 579 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 SUPT20HL1Q3ZLR7 823 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 CACHD1Q5VU97 1274 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 PAPD7Q5XG87 772 aaKnown RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 DARS2Q6PI48 645 aaKnown RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 MTHFD1LQ6UB35 978 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 SRGAP1Q7Z6B7 1085 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 YTHDF3Q7Z739 585 aaKnown RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 CTHRC1Q96CG8 243 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 DAZAP1Q96EP5 407 aaKnown RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 SNX18Q96RF0 628 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 C1QTNF7Q9BXJ2 289 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 CIPCQ9C0C6 399 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 LRRC27Q9C0I9 530 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 CHST8Q9H2A9 424 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 ASIC5Q9NY37 505 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 OBP2AQ9NY56 170 aa4.79□□□□□ -1.64
VPS41-213ENST00000485955 ZNF70Q9UC06 446 aaPredicted RBP4.79□□□□□ -1.64
VPS41-213ENST00000485955 GOLGA6CA6NDK9 693 aa4.78□□□□□ -1.64
VPS41-213ENST00000485955 GOLGA6BA6NDN3 693 aa4.78□□□□□ -1.64
VPS41-213ENST00000485955 H7C1Q1 480 aa4.78□□□□□ -1.64
VPS41-213ENST00000485955 PPP6CO00743 305 aa4.78□□□□□ -1.64
VPS41-213ENST00000485955 CD3EAPO15446 510 aaKnown RBP4.78□□□□□ -1.64
VPS41-213ENST00000485955 RGS10O43665 173 aa4.78□□□□□ -1.64
VPS41-213ENST00000485955 GOLGA6DP0CG33 693 aa4.78□□□□□ -1.64
VPS41-213ENST00000485955 SFPQP23246 707 aaKnown RBP eCLIP4.78□□□□□ -1.64
VPS41-213ENST00000485955 PEX2P28328 305 aa4.78□□□□□ -1.64
VPS41-213ENST00000485955 EPHB2P29323 1055 aa4.78□□□□□ -1.64
VPS41-213ENST00000485955 PRKAR1BP31321 381 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms