RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TPM2P07951 284 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 ZDHHC11BP0C7U3 371 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 ZNF165P49910 485 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 TUBP50607 506 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 BCAT1P54687 386 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 MAP3K7CLP57077 242 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 KCNMA1Q12791 1236 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 TAF10Q12962 218 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 PKDCCQ504Y2 493 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 LCLAT1Q6UWP7 414 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 BMP8AQ7Z5Y6 402 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 TTC30AQ86WT1 665 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 ARID3BQ8IVW6 561 aaPredicted RBP16.8■□□□□ 0.28
UPF3A-208ENST00000484246 DHX40Q8IX18 779 aaKnown RBP16.8■□□□□ 0.28
UPF3A-208ENST00000484246 CMTM8Q8IZV2 173 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 ANKRD20A12PQ8NF67 263 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 KXD1Q9BQD3 176 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 FBXO44Q9H4M3 255 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 PLCB1Q9NQ66 1216 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 TRPV5Q9NQA5 729 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 TRPM5Q9NZQ8 1165 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 TSPAN16Q9UKR8 245 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 DAAM1Q9Y4D1 1078 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 SMTNL1A8MU46 457 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 RNF225M0QZC1 329 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-208ENST00000484246 PRAMEF12O95522 483 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 SETSIPP0DME0 302 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 TCF3P15923 654 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 KIF11P52732 1056 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 COPB1P53618 953 aaKnown RBP16.79■□□□□ 0.28
UPF3A-208ENST00000484246 FCHO2Q0JRZ9 810 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 CNGA2Q16280 664 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 ZSCAN23Q3MJ62 389 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 VITQ6UXI7 678 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 KIAA1958Q8N8K9 716 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 TFAP2BQ92481 460 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 ZSWIM1Q9BR11 485 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 SMOC2Q9H3U7 446 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 WNT16Q9UBV4 365 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.79■□□□□ 0.28
UPF3A-208ENST00000484246 SCML2Q9UQR0 700 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 USP3Q9Y6I4 520 aa16.79■□□□□ 0.28
UPF3A-208ENST00000484246 TRAV19A0A0A6YYK7 116 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 HEPACAM2A8MVW5 462 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 BECN2A8MW95 431 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 XPO1O14980 1071 aaKnown RBP16.78■□□□□ 0.28
UPF3A-208ENST00000484246 NARSO43776 548 aaKnown RBP16.78■□□□□ 0.28
UPF3A-208ENST00000484246 OAS1P00973 400 aaKnown RBP16.78■□□□□ 0.28
UPF3A-208ENST00000484246 CD19P15391 556 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 PSMC3P17980 439 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 PLA2G4AP47712 749 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 SLC8A3P57103 927 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 PFKPQ01813 784 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 BST2Q10589 180 aaKnown RBP16.78■□□□□ 0.28
UPF3A-208ENST00000484246 IQCB1Q15051 598 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 GOLGA7BQ2TAP0 167 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 RAB41Q5JT25 222 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 TXNDC8Q6A555 127 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 GJB7Q6PEY0 223 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 GPRIN1Q7Z2K8 1008 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 CCDC186Q7Z3E2 898 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 MFSD6LQ8IWD5 586 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 SCAMP5Q8TAC9 235 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 DNASE1L2Q92874 299 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 FBXO32Q969P5 355 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 RSPRY1Q96DX4 576 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 NAA15Q9BXJ9 866 aaKnown RBP16.78■□□□□ 0.28
UPF3A-208ENST00000484246 PLA2G2FQ9BZM2 168 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 HESX1Q9UBX0 185 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 ARHGAP26Q9UNA1 814 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 DOCK6Q96HP0 2047 aa16.78■□□□□ 0.28
UPF3A-208ENST00000484246 TMEM221A6NGB7 291 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 PRR33A8MZF0 331 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 M0R296 226 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 ARNTLO00327 626 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 USP17L7P0C7H9 530 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 AVPR1AP37288 418 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 VIPR2P41587 438 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 SLC7A9P82251 487 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 APBA1Q02410 837 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 USP4Q13107 963 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 TMEM31Q5JXX7 168 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 FKBP15Q5T1M5 1219 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 KLHDC7AQ5VTJ3 777 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 PIGZQ86VD9 579 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 CELF5Q8N6W0 485 aaKnown RBP16.77■□□□□ 0.28
UPF3A-208ENST00000484246 MAB21L3Q8N8X9 362 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 KCTD13Q8WZ19 329 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 USP13Q92995 863 aaPredicted RBP16.77■□□□□ 0.28
UPF3A-208ENST00000484246 TRMT61BQ9BVS5 477 aaKnown RBP16.77■□□□□ 0.28
UPF3A-208ENST00000484246 VPS16Q9H269 839 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 TDP1Q9NUW8 608 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 DNAJC12Q9UKB3 198 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 AJAP1Q9UKB5 411 aaPredicted RBP16.77■□□□□ 0.28
UPF3A-208ENST00000484246 SIK3Q9Y2K2 1263 aa16.77■□□□□ 0.28
UPF3A-208ENST00000484246 C2orf78A6NCI8 922 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 CHADO15335 359 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 ATP1A3P13637 1013 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 KRT5P13647 590 aa16.76■□□□□ 0.27
UPF3A-208ENST00000484246 UCHL3P15374 230 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms