RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 VEPH1Q14D04 833 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 TAF12Q16514 161 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 PPP1R2P3Q6NXS1 205 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 RAD9BQ6WBX8 426 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 GPRIN1Q7Z2K8 1008 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 NUP93Q8N1F7 819 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 MSANTD4Q8NCY6 345 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 STKLD1Q8NE28 680 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 CEP295NLQ96MC4 621 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 ZNF830Q96NB3 372 aaPredicted RBP12.9□□□□□ -0.34
SDC1-206ENST00000482879 CPXM1Q96SM3 734 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 SYNCQ9H7C4 482 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 CYLDQ9NQC7 956 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 NAGPAQ9UK23 515 aa12.9□□□□□ -0.34
SDC1-206ENST00000482879 EPN1Q9Y6I3 576 aaPredicted RBP12.9□□□□□ -0.34
SDC1-206ENST00000482879 E5RJQ4 531 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 TNFRSF10BO14763 440 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 CCL16O15467 120 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 LINC01565O15544 149 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 NCK2O43639 380 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 GABBR2O75899 941 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 RTN3O95197 1032 aaPredicted RBP12.89□□□□□ -0.35
SDC1-206ENST00000482879 NDUFA10O95299 355 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 GLP2RO95838 553 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 HNRNPA1P09651 372 aaKnown RBP eCLIP12.89□□□□□ -0.35
SDC1-206ENST00000482879 CSH1P0DML2 217 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 CSH2P0DML3 217 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 SRGAP2BP0DMP2 458 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 RPL34P49207 117 aaKnown RBP12.89□□□□□ -0.35
SDC1-206ENST00000482879 TKTL1P51854 596 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 SLC5A3P53794 718 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 CCZ1BP86790 482 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 CCZ1P86791 482 aaPredicted RBP12.89□□□□□ -0.35
SDC1-206ENST00000482879 ADIGQ0VDE8 80 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 ADAM15Q13444 863 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 MTMR3Q13615 1198 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 SPA17Q15506 151 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 PTPN20Q4JDL3 420 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 RAB41Q5JT25 222 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 TMEM184AQ6ZMB5 413 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 MMS22LQ6ZRQ5 1243 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 DENND5BQ6ZUT9 1274 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 DNAJB7Q7Z6W7 309 aaPredicted RBP12.89□□□□□ -0.35
SDC1-206ENST00000482879 TMEM110Q86TL2 294 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 ITIH5Q86UX2 942 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 DNAAF5Q86Y56 855 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 PHF13Q86YI8 300 aaPredicted RBP12.89□□□□□ -0.35
SDC1-206ENST00000482879 SIX6OS1Q8N1H7 587 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 ELMOD1Q8N336 334 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 SCAMP5Q8TAC9 235 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 IPO4Q8TEX9 1081 aaKnown RBP12.89□□□□□ -0.35
SDC1-206ENST00000482879 C18orf8Q96DM3 657 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 ZNF512Q96ME7 567 aaPredicted RBP12.89□□□□□ -0.35
SDC1-206ENST00000482879 GUCD1Q96NT3 240 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 C11orf70Q9BRQ4 267 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 MIS12Q9H081 205 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 ISCUQ9H1K1 167 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 DZANK1Q9NVP4 752 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 COMMD8Q9NX08 183 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 MTMR10Q9NXD2 777 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 ZDHHC7Q9NXF8 308 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 ADAM22Q9P0K1 906 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 TJP2Q9UDY2 1190 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 NENFQ9UMX5 172 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 MAGED2Q9UNF1 606 aaPredicted RBP12.89□□□□□ -0.35
SDC1-206ENST00000482879 ASB3Q9Y575 518 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 DENND4CQ5VZ89 1909 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 CDH23Q9H251 3354 aa12.89□□□□□ -0.35
SDC1-206ENST00000482879 ANAPC1Q9H1A4 1944 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 CCDC195A0A1B0GUA6 201 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 EIF3CLB5ME19 914 aaKnown RBP12.88□□□□□ -0.35
SDC1-206ENST00000482879 ARHGAP6O43182 974 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 XYLBO75191 536 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 IPO7O95373 1038 aaKnown RBP12.88□□□□□ -0.35
SDC1-206ENST00000482879 ERBB2P04626 1255 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 CALB1P05937 261 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 USP17L7P0C7H9 530 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 FOSL2P15408 326 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 MMP8P22894 467 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 YWHAQP27348 245 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 HOXA9P31269 272 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 GABRB2P47870 512 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 USP46P62068 366 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 C1QBPQ07021 282 aaKnown RBP12.88□□□□□ -0.35
SDC1-206ENST00000482879 C2CD6Q53TS8 623 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 CYP4A22Q5TCH4 519 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 OR6B2Q6IFH4 312 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 EP400NLQ6ZTU2 488 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 MON1BQ7L1V2 547 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 SCUBE3Q8IX30 993 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 MCOLN2Q8IZK6 566 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 C12orf76Q8N812 135 aaPredicted RBP12.88□□□□□ -0.35
SDC1-206ENST00000482879 PSMG2Q969U7 264 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 EIF3CQ99613 913 aaKnown RBP12.88□□□□□ -0.35
SDC1-206ENST00000482879 PRKD2Q9BZL6 878 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 ULBP1Q9BZM6 244 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 FBXO44Q9H4M3 255 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 CLDND1Q9NY35 253 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 IL37Q9NZH6 218 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 EHD2Q9NZN4 543 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms