RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 FAM109AQ8N4B1 249 aa5.91□□□□□ -1.46
UPF3B-203ENST00000478840 DNAJB14Q8TBM8 379 aa5.91□□□□□ -1.46
UPF3B-203ENST00000478840 AFG1LQ8WV93 481 aa5.91□□□□□ -1.46
UPF3B-203ENST00000478840 GRAMD1AQ96CP6 724 aa5.91□□□□□ -1.46
UPF3B-203ENST00000478840 TAF1DQ9H5J8 278 aaPredicted RBP5.91□□□□□ -1.46
UPF3B-203ENST00000478840 JMJD4Q9H9V9 463 aa5.91□□□□□ -1.46
UPF3B-203ENST00000478840 C19orf53Q9UNZ5 99 aaPredicted RBP5.91□□□□□ -1.46
UPF3B-203ENST00000478840 MRPS17Q9Y2R5 130 aaKnown RBP5.91□□□□□ -1.46
UPF3B-203ENST00000478840 CHST2Q9Y4C5 530 aa5.91□□□□□ -1.46
UPF3B-203ENST00000478840 COL15A1P39059 1388 aa5.91□□□□□ -1.46
UPF3B-203ENST00000478840 PRAMEF33A0A0G2JMD5 474 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 CCDC196A0A1B0GTZ2 297 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 A6NLC8 198 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 B4E171 279 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 J3KTA2 159 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 RGS10O43665 173 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 SNX2O60749 519 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 PRAMEF10O60809 474 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 CBFA2T3O75081 653 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 BAIAP3O94812 1187 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 FGFR4P22455 802 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 TSPAN7P41732 249 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 LIFRP42702 1097 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 AARSP49588 968 aaKnown RBP eCLIP5.9□□□□□ -1.46
UPF3B-203ENST00000478840 MCM2P49736 904 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 TUBP50607 506 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 UBE3AQ05086 875 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 CHRNDQ07001 517 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 TRPC3Q13507 836 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 DYRK1AQ13627 763 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 CCNIQ14094 377 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 GRM4Q14833 912 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 FAAH2Q6GMR7 532 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 TCTN3Q6NUS6 607 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 MZT2BQ6NZ67 158 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 POLNQ7Z5Q5 900 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 CLNKQ7Z7G1 428 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 FUKQ8N0W3 1084 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 TSPYL6Q8N831 410 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 MB21D1Q8N884 522 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 CPT1CQ8TCG5 803 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 WDR60Q8WVS4 1066 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 HTRA1Q92743 480 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 GNRHR2Q96P88 292 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 KCNC2Q96PR1 638 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 TRAPPC9Q96Q05 1148 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 TWNKQ96RR1 684 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 DCLRE1CQ96SD1 692 aaKnown RBP5.9□□□□□ -1.46
UPF3B-203ENST00000478840 OSBPL9Q96SU4 736 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 VPS16Q9H269 839 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 EPS8L2Q9H6S3 715 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 FSCN3Q9NQT6 498 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 PI4KBQ9UBF8 816 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 FBXO2Q9UK22 296 aaPredicted RBP5.9□□□□□ -1.46
UPF3B-203ENST00000478840 NFU1Q9UMS0 254 aa5.9□□□□□ -1.46
UPF3B-203ENST00000478840 EFCAB8A8MWE9 144 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 GOLGA6L6A8MZA4 724 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 ADM5C9JUS6 153 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 HSP90AA1P07900 732 aaKnown RBP5.89□□□□□ -1.47
UPF3B-203ENST00000478840 JUPP14923 745 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 UQCRC1P31930 480 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 RAP1GAPP47736 663 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 PRKAG1P54619 331 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 ADAM17P78536 824 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 MC2RQ01718 297 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 OCA2Q04671 838 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 E2F2Q14209 437 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 CLCA4Q14CN2 919 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 SMAD1Q15797 465 aaKnown RBP5.89□□□□□ -1.47
UPF3B-203ENST00000478840 LCE3BQ5TA77 95 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 VPS53Q5VIR6 699 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 RINT1Q6NUQ1 792 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 FAM180BQ6P0A1 224 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 LRRC55Q6ZSA7 311 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 TBC1D1Q86TI0 1168 aaPredicted RBP5.89□□□□□ -1.47
UPF3B-203ENST00000478840 SP8Q8IXZ3 490 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 SLC15A3Q8IY34 581 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.89□□□□□ -1.47
UPF3B-203ENST00000478840 HDAC2Q92769 488 aaKnown RBP5.89□□□□□ -1.47
UPF3B-203ENST00000478840 COG8Q96MW5 612 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 MNTQ99583 582 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 TTPALQ9BTX7 342 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 OSBPL5Q9H0X9 879 aaPredicted RBP5.89□□□□□ -1.47
UPF3B-203ENST00000478840 GBA2Q9HCG7 927 aaPredicted RBP5.89□□□□□ -1.47
UPF3B-203ENST00000478840 NDUFAF4Q9P032 175 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 KCNE5Q9UJ90 142 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 CNTN6Q9UQ52 1028 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 USP15Q9Y4E8 981 aaPredicted RBP5.89□□□□□ -1.47
UPF3B-203ENST00000478840 AATKQ6ZMQ8 1374 aa5.89□□□□□ -1.47
UPF3B-203ENST00000478840 PNMA6EA0A0J9YXQ4 647 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 ZSCAN9O15535 394 aaPredicted RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 NUAK1O60285 661 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 TAF5LO75529 589 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 GPANK1O95872 356 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 TFRCP02786 760 aaKnown RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 CNPP09543 421 aaKnown RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 RBL1P28749 1068 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 APOBEC3AP31941 199 aaPredicted RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 HTR7P34969 479 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 KRT9P35527 623 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms