RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 CAMK1GQ96NX5 476 aa12.79□□□□□ -0.36
HDAC6-219ENST00000476625 ACCSQ96QU6 501 aa12.79□□□□□ -0.36
HDAC6-219ENST00000476625 GTPBP2Q9BX10 602 aaKnown RBP12.79□□□□□ -0.36
HDAC6-219ENST00000476625 BCCIPQ9P287 314 aaKnown RBP eCLIP12.79□□□□□ -0.36
HDAC6-219ENST00000476625 FBXO2Q9UK22 296 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-219ENST00000476625 ITGA11Q9UKX5 1188 aa12.79□□□□□ -0.36
HDAC6-219ENST00000476625 PI4KAP42356 2102 aa12.79□□□□□ -0.36
HDAC6-219ENST00000476625 ZNF840PA6NDX5 716 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 SOBPA7XYQ1 873 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 MAP3K13O43283 966 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 MBL2P11226 248 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-219ENST00000476625 TCF3P15923 654 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 SIM1P81133 766 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-219ENST00000476625 RBP5P82980 135 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 CEBPZQ03701 1054 aaKnown RBP12.78□□□□□ -0.36
HDAC6-219ENST00000476625 TAF10Q12962 218 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 RESTQ13127 1097 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 NR1H3Q13133 447 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 LY6G5CQ5SRR4 150 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 DENND5BQ6ZUT9 1274 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 LPCAT2Q7L5N7 544 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 HS2ST1Q7LGA3 356 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 LIMS2Q7Z4I7 341 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 NT5DC4Q86YG4 428 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 SYCP3Q8IZU3 236 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 CHCHD4Q8N4Q1 142 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 FSIP1Q8NA03 581 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 HVCN1Q96D96 273 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 HPDLQ96IR7 371 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 ZFRQ96KR1 1074 aaKnown RBP12.78□□□□□ -0.36
HDAC6-219ENST00000476625 PNKPQ96T60 521 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 ACOX2Q99424 681 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 ZNF518BQ9C0D4 1074 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 ARHGEF4Q9NR80 690 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 INTS13Q9NVM9 706 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 TRPM5Q9NZQ8 1165 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 LHX6Q9UPM6 363 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 IGF2RP11717 2491 aa12.78□□□□□ -0.36
HDAC6-219ENST00000476625 MYO18AQ92614 2054 aaKnown RBP12.77□□□□□ -0.36
HDAC6-219ENST00000476625 SLC26A4O43511 780 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 OLFM2O95897 454 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 OAS1P00973 400 aaKnown RBP12.77□□□□□ -0.37
HDAC6-219ENST00000476625 CST3P01034 146 aaPredicted RBP12.77□□□□□ -0.37
HDAC6-219ENST00000476625 NEFLP07196 543 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 IRF1P10914 325 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 GABRG2P18507 467 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 SCP2P22307 547 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 PCSK1P29120 753 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 HOXD13P35453 343 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 MAGEA11P43364 429 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 LHX1P48742 406 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 SLC7A9P82251 487 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 MRPS21P82921 87 aaKnown RBP12.77□□□□□ -0.37
HDAC6-219ENST00000476625 POSTNQ15063 836 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 LYSMD4Q5XG99 296 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 C19orf48Q6RUI8 117 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 PIP4P1Q86T03 277 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 SPATA18Q8TC71 538 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 CACTINQ8WUQ7 758 aaKnown RBP12.77□□□□□ -0.37
HDAC6-219ENST00000476625 FUBP3Q96I24 572 aaKnown RBP eCLIP12.77□□□□□ -0.37
HDAC6-219ENST00000476625 SPATA17Q96L03 361 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 MMS19Q96T76 1030 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 TTLL2Q9BWV7 592 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 PILRBQ9UKJ0 227 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 CDH9Q9ULB4 789 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 RAD54BQ9Y620 910 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 CEP295Q9C0D2 2601 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 BAHCC1Q9P281 2608 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 PTPRBP23467 1997 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 MYH10P35580 1976 aa12.77□□□□□ -0.37
HDAC6-219ENST00000476625 VPS37CA5D8V6 355 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-219ENST00000476625 APODP05090 189 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 ADH5P11766 374 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 GARTP22102 1010 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 WARSP23381 471 aaKnown RBP12.76□□□□□ -0.37
HDAC6-219ENST00000476625 ANXA13P27216 316 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 RRAGBQ5VZM2 374 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 LARP1BQ659C4 914 aaKnown RBP12.76□□□□□ -0.37
HDAC6-219ENST00000476625 C4orf50Q6ZRC1 276 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 SYT12Q8IV01 421 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 SLC41A1Q8IVJ1 513 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 BBS7Q8IWZ6 715 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 GPD1LQ8N335 351 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 RDH13Q8NBN7 331 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 WHAMMQ8TF30 809 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 EXOC4Q96A65 974 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 P2RY11Q96G91 374 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 ANKRD36BP1Q96IX9 119 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 KCNK16Q96T55 309 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 NUSAP1Q9BXS6 441 aaKnown RBP12.76□□□□□ -0.37
HDAC6-219ENST00000476625 B3GNT5Q9BYG0 378 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 CCSER2Q9H7U1 834 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 CALCOCO1Q9P1Z2 691 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 EVLQ9UI08 416 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-219ENST00000476625 EXOC7Q9UPT5 735 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 SMC3Q9UQE7 1217 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 TMEM131Q92545 1883 aa12.76□□□□□ -0.37
HDAC6-219ENST00000476625 TNFRSF10BO14763 440 aa12.75□□□□□ -0.37
HDAC6-219ENST00000476625 COCHO43405 550 aa12.75□□□□□ -0.37
HDAC6-219ENST00000476625 POU5F1Q01860 360 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms