RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 H3BMM5 538 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 EML1O00423 815 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 ATP9BO43861 1147 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 STX11O75558 287 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 TSPAN19P0C672 248 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 HERC3Q15034 1050 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 TMEM214Q6NUQ4 689 aaKnown RBP9.29□□□□□ -0.92
COL6A3-210ENST00000473258 FASTKD5Q7L8L6 764 aaKnown RBP9.29□□□□□ -0.92
COL6A3-210ENST00000473258 TMC7Q7Z402 723 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 MPP5Q8N3R9 675 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 ZNF614Q8N883 585 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 HELQQ8TDG4 1101 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 CHP1Q99653 195 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 ARPC5LQ9BPX5 153 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 CASS4Q9NQ75 786 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 KLHL1Q9NR64 748 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 INTS10Q9NVR2 710 aaKnown RBP9.29□□□□□ -0.92
COL6A3-210ENST00000473258 CNOT8Q9UFF9 292 aaKnown RBP9.29□□□□□ -0.92
COL6A3-210ENST00000473258 PCDHB4Q9Y5E5 795 aa9.29□□□□□ -0.92
COL6A3-210ENST00000473258 EIF3DO15371 548 aaKnown RBP eCLIP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 CRTAPO75718 401 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 UFL1O94874 794 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 CYP2C9P11712 490 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 SLC1A4P43007 532 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 CA9Q16790 459 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 TTC23Q5W5X9 447 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 SZRD1Q7Z422 152 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 CYP2U1Q7Z449 544 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 CCDC71Q8IV32 467 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 MSANTD3Q96H12 275 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 SUCLG2Q96I99 432 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 AK8Q96MA6 479 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 FAM111AQ96PZ2 611 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 FANCFQ9NPI8 374 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 SMARCAL1Q9NZC9 954 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 DMGDHQ9UI17 866 aaKnown RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 MKLN1Q9UL63 735 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 PARD3Q8TEW0 1356 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 FBP2O00757 339 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 CD53P19397 219 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 MRPS22P82650 360 aaKnown RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 MSLNQ13421 630 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 COTL1Q14019 142 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 NDUFAF6Q330K2 333 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 SLC45A4Q5BKX6 768 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ZCCHC8Q6NZY4 707 aaKnown RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 BORAQ6PGQ7 559 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 HAGHLQ6PII5 290 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 LMBR1LQ6UX01 489 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 NSMFQ6X4W1 530 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ULK2Q8IYT8 1036 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 VPS33AQ96AX1 596 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 LURAP1Q96LR2 239 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ERMAPQ96PL5 475 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 TEKT3Q9BXF9 490 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 PHF11Q9UIL8 331 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 SRPRBQ9Y5M8 271 aaKnown RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 SNX8Q9Y5X2 465 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 UMODL1Q5DID0 1318 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 PCDH11XQ9BZA7 1347 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ATP5J2-PTCD1G3V325 749 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 DNM1LO00429 736 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 CPNE3O75131 537 aaKnown RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 STARD3NLO95772 234 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ATP5BP06576 529 aaKnown RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 WEE2P0C1S8 567 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 TCF4P15884 667 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 YARSP54577 528 aaKnown RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ULK3Q6PHR2 472 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 TTC7BQ86TV6 843 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 NDUFAF2Q8N183 169 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 C8orf48Q96LL4 319 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 VPS35Q96QK1 796 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 COPS4Q9BT78 406 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ILKAPQ9H0C8 392 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 BFARQ9NZS9 450 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 HMGXB4Q9UGU5 601 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ZNF652Q9Y2D9 606 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 GSTK1Q9Y2Q3 226 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 SF3B1O75533 1304 aaKnown RBP eCLIP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 A0A0X1KG70 313 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 PLD2O14939 933 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 KPNA5O15131 536 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ATG7O95352 703 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 CRKP46108 304 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 RTP1P59025 263 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 PRKG2Q13237 762 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 TOMM20Q15388 145 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 USP39Q53GS9 565 aaKnown RBP9.28□□□□□ -0.92
COL6A3-210ENST00000473258 POU5F2Q8N7G0 328 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 ATG16L2Q8NAA4 619 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 OR8K3Q8NH51 312 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 GATAD2BQ8WXI9 593 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 TP53INP1Q96A56 240 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 FAM149B1Q96BN6 582 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 HSPBAP1Q96EW2 488 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 FAM105AQ9NUU6 356 aa9.28□□□□□ -0.92
COL6A3-210ENST00000473258 LRRC9Q6ZRR7 1453 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 RGSL1A5PLK6 1076 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms