RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TPP2P29144 1249 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 PRKAA1Q13131 559 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 DENND1BQ6P3S1 775 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 ZNF512BQ96KM6 892 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 JPH1Q9HDC5 661 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 AASDHPPTQ9NRN7 309 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 CCDC162PA2VCL2 907 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 TEX33O43247 280 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 OLR1P78380 273 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 DMPKQ09013 629 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 RSBN1Q5VWQ0 802 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 BTBD8Q5XKL5 378 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 ZCCHC8Q6NZY4 707 aaKnown RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 ING4Q9UNL4 249 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 RARBP10826 455 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 PCSK1P29120 753 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 AKT1P31749 480 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 MZT2AQ6P582 158 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 PRR23BQ6ZRT6 265 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 ADHFE1Q8IWW8 467 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 SLC20A1Q8WUM9 679 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 FLT1P17948 1338 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 EFCAB10A6NFE3 127 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 C2orf81A6NN90 581 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 LRRC74AQ0VAA2 488 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 TRIM25Q14258 630 aaKnown RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 MAGEC3Q8TD91 643 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 PCDHA10Q9Y5I2 948 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 WWP2O00308 870 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 ADCY6O43306 1168 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 KCNA6P17658 529 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 GUCA1AP43080 201 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 NET1Q7Z628 596 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 HDAC7Q8WUI4 952 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 MARCOQ9UEW3 520 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-209ENST00000472056 CORO2BQ9UQ03 480 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 NEXMIFQ5QGS0 1516 aa13.75□□□□□ -0.21
COL6A3-209ENST00000472056 PIPSLA2A3N6 862 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 USP17L3A6NCW0 530 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 USP17L4A6NCW7 530 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 MSH3P20585 1137 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 PNPLA4P41247 253 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 FXR2P51116 673 aaKnown RBP eCLIP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 USP17L1Q7RTZ2 530 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 COA7Q96BR5 231 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 THUMPD3Q9BV44 507 aaKnown RBP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 SLITRK2Q9H156 845 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 RNPEPL1Q9HAU8 725 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 KCNK4Q9NYG8 393 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 CCDC182A6NF36 153 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 PEG10Q86TG7 708 aaKnown RBP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 TMEM237Q96Q45 408 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 ING3Q9NXR8 418 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 FNDC3AQ9Y2H6 1198 aaKnown RBP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 GSAPA4D1B5 854 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 PTGER2P43116 358 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 C4orf33Q8N1A6 199 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 GRPEL2Q8TAA5 225 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 MYLK2Q9H1R3 596 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 SNX13Q9Y5W8 968 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 METP08581 1390 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 ZNF185O15231 689 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 ATP9AO75110 1047 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 SNRNP35Q16560 246 aaKnown RBP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 SLC13A5Q86YT5 568 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 SPATA17Q96L03 361 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 ZSWIM1Q9BR11 485 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 KATNAL1Q9BW62 490 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 PLGRKTQ9HBL7 147 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 PCSK1NQ9UHG2 260 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 TGM3Q08188 693 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 CCDC157Q569K6 752 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 SLC45A4Q5BKX6 768 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 HAUS6Q7Z4H7 955 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 RFC5P40937 340 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 MYBPC2Q14324 1141 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 ZDHHC13Q8IUH4 622 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 CHP1Q99653 195 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 TCF7L2Q9NQB0 619 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 MFN2O95140 757 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 YWHABP31946 246 aaKnown RBP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 CLEC16AQ2KHT3 1053 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 PREPLQ4J6C6 727 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 SLC26A11Q86WA9 606 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 KBTBD8Q8NFY9 601 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 NMD3Q96D46 503 aaKnown RBP13.74□□□□□ -0.21
COL6A3-209ENST00000472056 EPB41L4BQ9H329 900 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 ALG6Q9Y672 507 aa13.74□□□□□ -0.21
COL6A3-209ENST00000472056 SYNCRIPO60506 623 aaKnown RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 TWF2Q6IBS0 349 aaKnown RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 HDHD2Q9H0R4 259 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 ANKRD26Q9UPS8 1709 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 CYP2C9P11712 490 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 DENND6AQ8IWF6 608 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 FEZF2Q8TBJ5 459 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 CDK5RAP1Q96SZ6 601 aaKnown RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 NT5C1AQ9BXI3 368 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 POLR3FQ9H1D9 316 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 FKBP14Q9NWM8 211 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 SLC30A1Q9Y6M5 507 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms