RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ZACN	Q401N2	412 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	TEDDM1	Q5T9Z0	273 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	FAXC	Q5TGI0	409 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	RAP1GAP2	Q684P5	730 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	TLDC1	Q6P9B6	456 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	CCDC28A	Q8IWP9	274 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	IZUMO1	Q8IYV9	350 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	NKAP	Q8N5F7	415 aa	Known RBP	4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	MYCBPAP	Q8TBZ2	947 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	OSCP1	Q8WVF1	389 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	MUL1	Q969V5	352 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044		Q96MF0	132 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	COQ10A	Q96MF6	247 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	KRTAP4-2	Q9BYR5	136 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	4.54	□□□□□ -1.68	6e-13	■■■□□ 17.1
PTCD3-209	ENST00000472044	PCDHAC1	Q9H158	963 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	AGO4	Q9HCK5	861 aa	Known RBP	4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	KLC4	Q9NSK0	619 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	SYBU	Q9NX95	663 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	TMOD4	Q9NZQ9	345 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	DNAJB11	Q9UBS4	358 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	SH2B3	Q9UQQ2	575 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	MYRF	Q9Y2G1	1151 aa		4.54	□□□□□ -1.68
PTCD3-209	ENST00000472044	ADGRA2	Q96PE1	1338 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	hCG_1642624	A0A1W2PR95	340 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044		B8ZZF3	427 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	SYT5	O00445	386 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	YY2	O15391	372 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	NARS	O43776	548 aa	Known RBP	4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	GLP2R	O95838	553 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	AR	P10275	920 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	MST1	P26927	711 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	ADORA2A	P29274	412 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	FOLR3	P41439	243 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	NSUN2	Q08J23	767 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	GRM1	Q13255	1194 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	TRIM14	Q14142	442 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	SPARCL1	Q14515	664 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZRSR2	Q15696	482 aa	Known RBP	4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	PFKFB4	Q16877	469 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	TRIM71	Q2Q1W2	868 aa	Known RBP	4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	INO80D	Q53TQ3	878 aa	Predicted RBP	4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	TMTC4	Q5T4D3	741 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	USP49	Q70CQ1	688 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	FAM71B	Q8TC56	605 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	TMEM171	Q8WVE6	324 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	SOCS4	Q8WXH5	440 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	LINC00476	Q8WZB0	136 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	EID2B	Q96D98	161 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZNF747	Q9BV97	191 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	INO80B	Q9C086	356 aa	Predicted RBP	4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	SLC25A32	Q9H2D1	315 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	CASS4	Q9NQ75	786 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	TRIM36	Q9NQ86	728 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	IGSF9	Q9P2J2	1179 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	TES	Q9UGI8	421 aa	Known RBP	4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	DTNA	Q9Y4J8	743 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	SNX14	Q9Y5W7	946 aa		4.53	□□□□□ -1.68
PTCD3-209	ENST00000472044	COL15A1	P39059	1388 aa		4.53	□□□□□ -1.69
PTCD3-209	ENST00000472044	NTSR2	O95665	410 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	ONECUT2	O95948	504 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	ITGA5	P08648	1049 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	HKR1	P10072	659 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	SERPINF1	P36955	418 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	HAL	P42357	657 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	GRK6	P43250	576 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	GATM	P50440	423 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	PGD	P52209	483 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	ITGA8	P53708	1063 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	TIRAP	P58753	221 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	KRTAP10-2	P60368	255 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	FHL3	Q13643	280 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	ATP1A4	Q13733	1029 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	CLCA4	Q14CN2	919 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	CCDC38	Q502W7	563 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	ZNF618	Q5T7W0	954 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	DEPDC1	Q5TB30	811 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	ABLIM2	Q6H8Q1	611 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	CCDC174	Q6PII3	467 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044		Q6ZNX1	250 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	CERS3	Q8IU89	383 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	CACNA2D3	Q8IZS8	1091 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	ATRIP	Q8WXE1	791 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	RFK	Q969G6	155 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	FKBP10	Q96AY3	582 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	PBK	Q96KB5	322 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	RMDN3	Q96TC7	470 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	AIFM2	Q9BRQ8	373 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	C17orf80	Q9BSJ5	609 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	VN1R3	Q9BXE9	311 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	CHMP4A	Q9BY43	222 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	MMRN2	Q9H8L6	949 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	PPCS	Q9HAB8	311 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	GLOD4	Q9HC38	313 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	OBP2B	Q9NPH6	170 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	HELLS	Q9NRZ9	838 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	EHD3	Q9NZN3	535 aa		4.52	□□□□□ -1.69
PTCD3-209	ENST00000472044	REXO2	Q9Y3B8	237 aa	Known RBP	4.52	□□□□□ -1.69

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