RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 TMEM119Q4V9L6 283 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 CACHD1Q5VU97 1274 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 DPY19L3Q6ZPD9 716 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 SRRM1Q8IYB3 904 aaKnown RBP4.76□□□□□ -1.65
VPS13D-203ENST00000466732 SEMA6DQ8NFY4 1073 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 TIFAQ96CG3 184 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 MACROD1Q9BQ69 325 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 TRIM5Q9C035 493 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 HDAC9Q9UKV0 1011 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 PCDHGB6Q9Y5F9 930 aa4.76□□□□□ -1.65
VPS13D-203ENST00000466732 CGB1A6NKQ9 187 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 RASAL1O95294 804 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 PARNO95453 639 aaKnown RBP4.75□□□□□ -1.65
VPS13D-203ENST00000466732 PRKCBP05771 671 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 NHLRC4P0CG21 123 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-203ENST00000466732 TXNP10599 105 aaKnown RBP4.75□□□□□ -1.65
VPS13D-203ENST00000466732 IL1R1P14778 569 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 PRKAR1BP31321 381 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 PTDSS1P48651 473 aaKnown RBP4.75□□□□□ -1.65
VPS13D-203ENST00000466732 ARHGEF7Q14155 803 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 NPY5RQ15761 445 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 PROSER3Q2NL68 480 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 ZNF782Q6ZMW2 699 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-203ENST00000466732 DGKHQ86XP1 1220 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 ABHD11Q8NFV4 315 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 RSPRY1Q96DX4 576 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 MSLNLQ96KJ4 702 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 LENG8Q96PV6 779 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-203ENST00000466732 PRR25Q96S07 402 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 THAP7Q9BT49 309 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-203ENST00000466732 CHST8Q9H2A9 424 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 RGS17Q9UGC6 210 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-203ENST00000466732 MID2Q9UJV3 735 aa4.75□□□□□ -1.65
VPS13D-203ENST00000466732 ARHGEF17Q96PE2 2063 aaPredicted RBP4.74□□□□□ -1.65
VPS13D-203ENST00000466732 KAT6AQ92794 2004 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 SMIM22K7EJ46 135 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 AP4M1O00189 453 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 RAB27BO00194 218 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 CD3EAPO15446 510 aaKnown RBP4.74□□□□□ -1.65
VPS13D-203ENST00000466732 RGS10O43665 173 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 RRP9O43818 475 aaKnown RBP4.74□□□□□ -1.65
VPS13D-203ENST00000466732 PDE8BO95263 885 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 ACVR2AP27037 513 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 UQCRC1P31930 480 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 ITGA8P53708 1063 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 HOXA4Q00056 320 aaPredicted RBP4.74□□□□□ -1.65
VPS13D-203ENST00000466732 E2F1Q01094 437 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 SRSF4Q08170 494 aaKnown RBP4.74□□□□□ -1.65
VPS13D-203ENST00000466732 SLC29A2Q14542 456 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 ZNF750Q32MQ0 723 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 L1TD1Q5T7N2 865 aaKnown RBP4.74□□□□□ -1.65
VPS13D-203ENST00000466732 FCRL6Q6DN72 434 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 MTHFD1LQ6UB35 978 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 CYP2W1Q8TAV3 490 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 DDB2Q92466 427 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 APOL5Q9BWW9 433 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 BTBD1Q9H0C5 482 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 NUP62CLQ9H1M0 184 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 DHX36Q9H2U1 1008 aaKnown RBP4.74□□□□□ -1.65
VPS13D-203ENST00000466732 ITGB1BP2Q9UKP3 347 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 USP22Q9UPT9 525 aa4.74□□□□□ -1.65
VPS13D-203ENST00000466732 DRG1Q9Y295 367 aaKnown RBP4.74□□□□□ -1.65
VPS13D-203ENST00000466732 FER1L4A9Z1Z3 1794 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 PSMD9O00233 223 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 PIAS2O75928 621 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 RPL17P18621 184 aaKnown RBP4.73□□□□□ -1.65
VPS13D-203ENST00000466732 FPR3P25089 353 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 EPHA3P29320 983 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 CPT1AP50416 773 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 SLC10A2Q12908 348 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-203ENST00000466732 GRM1Q13255 1194 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 PRAMEF17Q5VTA0 474 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 ZKSCAN2Q63HK3 967 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 TRIM72Q6ZMU5 477 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 UNC13DQ70J99 1090 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 YAF2Q8IY57 180 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 TTC17Q96AE7 1141 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 ZBTB45Q96K62 511 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-203ENST00000466732 VN1R3Q9BXE9 311 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 DDX21Q9NR30 783 aaKnown RBP eCLIP4.73□□□□□ -1.65
VPS13D-203ENST00000466732 FLRT1Q9NZU1 646 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 CHPF2Q9P2E5 772 aa4.73□□□□□ -1.65
VPS13D-203ENST00000466732 TISP43B9A030 160 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 F8W8V4 182 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 EXOC3O60645 756 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 PMPCBO75439 489 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 LATS1O95835 1130 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 CELA2AP08217 269 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 HGFP14210 728 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 TPH1P17752 444 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 BTF3P20290 206 aaKnown RBP4.72□□□□□ -1.65
VPS13D-203ENST00000466732 GKP32189 559 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 CARSP49589 748 aaKnown RBP4.72□□□□□ -1.65
VPS13D-203ENST00000466732 TIRAPP58753 221 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 TUBA4AP68366 448 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 TIAL1Q01085 375 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS13D-203ENST00000466732 RNASE12Q5GAN4 147 aaKnown RBP4.72□□□□□ -1.65
VPS13D-203ENST00000466732 KIRREL2Q6UWL6 708 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 RAB11FIP4Q86YS3 637 aa4.72□□□□□ -1.65
VPS13D-203ENST00000466732 KRT78Q8N1N4 520 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms