RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CHN2P52757 468 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 TMCO4Q5TGY1 634 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 SH2D5Q6ZV89 423 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 NUDCD3Q8IVD9 361 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 PPIL6Q8IXY8 311 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 ZFP28Q8NHY6 868 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 IL31RAQ8NI17 732 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 VTI1AQ96AJ9 217 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 PCDH9Q9HC56 1237 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 SSU72Q9NP77 194 aaKnown RBP12.2□□□□□ -0.46
CPSF3-202ENST00000460593 TNRC6CQ9HCJ0 1690 aaKnown RBP12.2□□□□□ -0.46
CPSF3-202ENST00000460593 WNK3Q9BYP7 1800 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 PDLIM1O00151 329 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 TRPA1O75762 1119 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 WEE2P0C1S8 567 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 ITGB5P18084 799 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 GNA15P30679 374 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 TBL3Q12788 808 aaKnown RBP12.2□□□□□ -0.46
CPSF3-202ENST00000460593 HNRNPDQ14103 355 aaKnown RBP12.2□□□□□ -0.46
CPSF3-202ENST00000460593 TAF5Q15542 800 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 MYLK3Q32MK0 819 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 SEZ6Q53EL9 994 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 NPNTQ6UXI9 565 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 TMC7Q7Z402 723 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 CHSY1Q86X52 802 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 RBM12BQ8IXT5 1001 aaKnown RBP12.2□□□□□ -0.46
CPSF3-202ENST00000460593 LARGE2Q8N3Y3 721 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.2□□□□□ -0.46
CPSF3-202ENST00000460593 RSAD2Q8WXG1 361 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 BSNDQ8WZ55 320 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 TJP2Q9UDY2 1190 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 PCDHB2Q9Y5E7 798 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 PTPRJQ12913 1337 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 GH2P01242 217 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 CDK4P11802 303 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 PTP4A2Q12974 167 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 DPY19L2Q6NUT2 758 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 DCUN1D2Q6PH85 259 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 RCOR2Q8IZ40 523 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 PRICKLE1Q96MT3 831 aaPredicted RBP12.2□□□□□ -0.46
CPSF3-202ENST00000460593 ARHGEF38Q9NXL2 777 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 KCNK4Q9NYG8 393 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 IL1RAPL1Q9NZN1 696 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 SLC17A6Q9P2U8 582 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 PCSK1NQ9UHG2 260 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 BLOC1S6Q9UL45 172 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 SOX13Q9UN79 622 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 LZTS1Q9Y250 596 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 STK24Q9Y6E0 443 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 MYH9P35579 1960 aaKnown RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 IQANK1A0A1B0GTG1 560 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 BOLA2-SMG1P6H3BVE0 249 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 COQ9O75208 318 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 TMCC1O94876 653 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 ITGBL1O95965 494 aaPredicted RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 DESP17661 470 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 TNNI1P19237 187 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 CDKN2BP42772 138 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 ACOT2P49753 483 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 BRDTQ58F21 947 aaPredicted RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 MROH9Q5TGP6 573 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 CIAPIN1Q6FI81 312 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 ATG14Q6ZNE5 492 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 SH3BP5LQ7L8J4 393 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 DEFB107AQ8IZN7 70 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 PDIK1LQ8N165 341 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 MIS12Q9H081 205 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 APOBEC3GQ9HC16 384 aaKnown RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 TBX20Q9UMR3 447 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 HBS1LQ9Y450 684 aaKnown RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 AFG3L2Q9Y4W6 797 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 ZNF536O15090 1300 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 CLPTM1O96005 669 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 ADARP55265 1226 aaKnown RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 COG7P83436 770 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 GTF2BQ00403 316 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 CYP24A1Q07973 514 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 DBN1Q16643 649 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 DNAL1Q4LDG9 190 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 ANKRD20A4Q4UJ75 823 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 APOBEC3HQ6NTF7 200 aaKnown RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 TATDN1Q6P1N9 297 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 RIN3Q8TB24 985 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 DGCR14Q96DF8 476 aaKnown RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 ZNF778Q96MU6 729 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 PRPF18Q99633 342 aaKnown RBP12.19□□□□□ -0.46
CPSF3-202ENST00000460593 WWP1Q9H0M0 922 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 COQ4Q9Y3A0 265 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 ZNF711Q9Y462 761 aa12.19□□□□□ -0.46
CPSF3-202ENST00000460593 TTLL13PA6NNM8 815 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 F5H423 210 aaPredicted RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 H3BSA7 217 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 HLA-DRAP01903 254 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 POLR2MP0CAP2 368 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 GTF2H1P32780 548 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 NCKAP1LP55160 1127 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 MYBPC2Q14324 1141 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PDK1Q15118 436 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 TFDP3Q5H9I0 405 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PLEKHA7Q6IQ23 1121 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms