RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 TAF5Q15542 800 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 PLEKHA7Q6IQ23 1121 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 PHF13Q86YI8 300 aaPredicted RBP16.1■□□□□ 0.17
LMNB1-203ENST00000460265 SNTG2Q9NY99 539 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 SCOCQ9UIL1 159 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 CPSF3Q9UKF6 684 aaKnown RBP16.1■□□□□ 0.17
LMNB1-203ENST00000460265 ATG7O95352 703 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 CD48P09326 243 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 OGDHQ02218 1023 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 MMRN1Q13201 1228 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 C15orf39Q6ZRI6 1047 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 EXOC3L1Q86VI1 746 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 GBP7Q8N8V2 638 aaPredicted RBP16.1■□□□□ 0.17
LMNB1-203ENST00000460265 C1orf127Q8N9H9 656 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 MROH8Q9H579 483 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 SEPT10Q9P0V9 454 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 USP15Q9Y4E8 981 aaPredicted RBP16.1■□□□□ 0.17
LMNB1-203ENST00000460265 TNFAIP2Q03169 654 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 IFRD2Q12894 506 aaPredicted RBP16.1■□□□□ 0.17
LMNB1-203ENST00000460265 RASIP1Q5U651 963 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 PDIK1LQ8N165 341 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 CENPTQ96BT3 561 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 CFAP36Q96G28 342 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 TMEM176AQ96HP8 235 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 VCPIP1Q96JH7 1222 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 SLITRK1Q96PX8 696 aa16.1■□□□□ 0.17
LMNB1-203ENST00000460265 TGS1Q96RS0 853 aaKnown RBP16.1■□□□□ 0.17
LMNB1-203ENST00000460265 ZMYND8Q9ULU4 1186 aaPredicted RBP16.1■□□□□ 0.17
LMNB1-203ENST00000460265 ZBTB48P10074 688 aaPredicted RBP16.09■□□□□ 0.17
LMNB1-203ENST00000460265 FASTKD3Q14CZ7 662 aaKnown RBP16.09■□□□□ 0.17
LMNB1-203ENST00000460265 HIF1AQ16665 826 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 SH3D19Q5HYK7 790 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 VSIG1Q86XK7 387 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 KATNAL2Q8IYT4 538 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 TWNKQ96RR1 684 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 ASNSD1Q9NWL6 643 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 PIN4Q9Y237 131 aaKnown RBP16.09■□□□□ 0.17
LMNB1-203ENST00000460265 CDH16O75309 829 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 SSTR1P30872 391 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 RBP5P82980 135 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 CAV1Q03135 178 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 PPP2R5DQ14738 602 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 TARBP2Q15633 366 aaKnown RBP16.09■□□□□ 0.17
LMNB1-203ENST00000460265 CCDC6Q16204 474 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 C3orf62Q6ZUJ4 267 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 FAF2Q96CS3 445 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 RAB3IPQ96QF0 476 aaPredicted RBP16.09■□□□□ 0.17
LMNB1-203ENST00000460265 PITPNM3Q9BZ71 974 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 CHMP2BQ9UQN3 213 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 MICAL2O94851 1124 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 SH3PXD2AQ5TCZ1 1133 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 PPP1R2P3Q6NXS1 205 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 NPNTQ6UXI9 565 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 ARHGEF18Q6ZSZ5 1173 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 NETO2Q8NC67 525 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 RXFP2Q8WXD0 754 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 GBP5Q96PP8 586 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 NUDCD1Q96RS6 583 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 NT5C1AQ9BXI3 368 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 DHX35Q9H5Z1 703 aaKnown RBP16.09■□□□□ 0.17
LMNB1-203ENST00000460265 PCMTD2Q9NV79 361 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.09■□□□□ 0.17
LMNB1-203ENST00000460265 NKX1-2Q9UD57 310 aaPredicted RBP16.09■□□□□ 0.17
LMNB1-203ENST00000460265 TSPAN16Q9UKR8 245 aa16.09■□□□□ 0.17
LMNB1-203ENST00000460265 HOXC6P09630 235 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 NUDT17P0C025 328 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 MIPP30301 263 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 SDC4P31431 198 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 ACBD5Q5T8D3 534 aaPredicted RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 ANKS1BQ7Z6G8 1248 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 MAP7D3Q8IWC1 876 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 UBE2OQ9C0C9 1292 aaKnown RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 A0A0G2JLL6 359 aaPredicted RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 E5RJQ4 531 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 SNX3O60493 162 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 MYL3P08590 195 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 IQCF3P0C7M6 154 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 IMPDH2P12268 514 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 CYP2B6P20813 491 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 SP100P23497 879 aaPredicted RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 PTK6Q13882 451 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 NOL9Q5SY16 702 aaKnown RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 PRRT2Q7Z6L0 340 aaPredicted RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 DNAJC9Q8WXX5 260 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 LENG1Q96BZ8 264 aaPredicted RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 PGM2Q96G03 612 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 ANKRD27Q96NW4 1050 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 LPIN3Q9BQK8 851 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 MED10Q9BTT4 135 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 DDX56Q9NY93 547 aaKnown RBP16.08■□□□□ 0.16
LMNB1-203ENST00000460265 KLHL14Q9P2G3 628 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 USP18Q9UMW8 372 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 DOCK5Q9H7D0 1870 aa16.08■□□□□ 0.16
LMNB1-203ENST00000460265 GAS2O43903 313 aaKnown RBP16.07■□□□□ 0.16
LMNB1-203ENST00000460265 IL18RAPO95256 599 aa16.07■□□□□ 0.16
LMNB1-203ENST00000460265 ATP6V1C1P21283 382 aa16.07■□□□□ 0.16
LMNB1-203ENST00000460265 BCAR1P56945 870 aa16.07■□□□□ 0.16
LMNB1-203ENST00000460265 IL9RQ01113 521 aa16.07■□□□□ 0.16
LMNB1-203ENST00000460265 ZBTB16Q05516 673 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms