RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CCR3P51677 355 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 NDST1P52848 882 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 SLC7A9P82251 487 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 GAS6Q14393 721 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 PON2Q15165 354 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 KRT39Q6A163 491 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 TRIM68Q6AZZ1 485 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 CC2D1AQ6P1N0 951 aaPredicted RBP12.79□□□□□ -0.36
USP40-210ENST00000454354 ACOT1Q86TX2 421 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 FUKQ8N0W3 1084 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 NUP93Q8N1F7 819 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 SYNPOQ8N3V7 929 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 SPEM1Q8N4L4 309 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 PDZD8Q8NEN9 1154 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 TTC8Q8TAM2 541 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 TAS1R2Q8TE23 839 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 OSCP1Q8WVF1 389 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 OVCA2Q8WZ82 227 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 SMARCE1Q969G3 411 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 FAXDC2Q96IV6 333 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 SLITRK1Q96PX8 696 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 IMPG2Q9BZV3 1241 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 EBF3Q9H4W6 596 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 CYP3A43Q9HB55 503 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 CSNK1G1Q9HCP0 422 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 DMAP1Q9NPF5 467 aaPredicted RBP12.79□□□□□ -0.36
USP40-210ENST00000454354 ZSCAN32Q9NX65 697 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 IL37Q9NZH6 218 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 HOOK1Q9UJC3 728 aaKnown RBP12.79□□□□□ -0.36
USP40-210ENST00000454354 RALGAPA1Q6GYQ0 2036 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 CACNA1AO00555 2505 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 FAM92AA1XBS5 289 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 CETN3O15182 167 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 SLC16A3O15427 465 aaKnown RBP12.78□□□□□ -0.36
USP40-210ENST00000454354 KINO60870 393 aaKnown RBP12.78□□□□□ -0.36
USP40-210ENST00000454354 EPB41P11171 864 aaKnown RBP12.78□□□□□ -0.36
USP40-210ENST00000454354 ARSAP15289 507 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 YWHAQP27348 245 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 ZXDBP98169 803 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 TAF10Q12962 218 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 EML3Q32P44 896 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 SNX30Q5VWJ9 437 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 ADSSL1Q8N142 457 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 ZMIZ2Q8NF64 920 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 SH3RF2Q8TEC5 729 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 ATP2A3Q93084 1043 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 KCNK16Q96T55 309 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 MED10Q9BTT4 135 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 NIF3L1Q9GZT8 377 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 KRT82Q9NSB4 513 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 COMMD8Q9NX08 183 aa12.78□□□□□ -0.36
USP40-210ENST00000454354 CIZ1Q9ULV3 898 aaPredicted RBP12.78□□□□□ -0.36
USP40-210ENST00000454354 DCHS1Q96JQ0 3298 aa12.77□□□□□ -0.36
USP40-210ENST00000454354 TRDMT1O14717 391 aaKnown RBP12.77□□□□□ -0.37
USP40-210ENST00000454354 STX10O60499 249 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 CILPO75339 1184 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 AP1G2O75843 785 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 ZDHHC11BP0C7U3 371 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 CCDC130P13994 396 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 IFNAR2P48551 515 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 MXI1P50539 228 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 SLC5A3P53794 718 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 FKBP3Q00688 224 aaKnown RBP12.77□□□□□ -0.37
USP40-210ENST00000454354 AMPD2Q01433 879 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 LRRC63Q05C16 580 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 ORC1Q13415 861 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 PPP2R5DQ14738 602 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 TMEM196Q5HYL7 178 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 TSSK4Q6SA08 328 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 Q6ZS52 159 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 CPA6Q8N4T0 437 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 SUMF1Q8NBK3 374 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 SLC2A14Q8TDB8 520 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 ERCC4Q92889 916 aaPredicted RBP12.77□□□□□ -0.37
USP40-210ENST00000454354 FBXO32Q969P5 355 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 TWNKQ96RR1 684 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 HNRNPABQ99729 332 aaKnown RBP12.77□□□□□ -0.37
USP40-210ENST00000454354 TSG101Q99816 390 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 SMOQ99835 787 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 RNF38Q9H0F5 515 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 FAM124BQ9H5Z6 455 aaPredicted RBP12.77□□□□□ -0.37
USP40-210ENST00000454354 ECT2Q9H8V3 914 aa12.77□□□□□ -0.37
USP40-210ENST00000454354 RBM12Q9NTZ6 932 aaKnown RBP12.77□□□□□ -0.37
USP40-210ENST00000454354 DUS2Q9NX74 493 aaKnown RBP12.77□□□□□ -0.37
USP40-210ENST00000454354 LEFTY2O00292 366 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 TRIM21P19474 475 aaKnown RBP12.76□□□□□ -0.37
USP40-210ENST00000454354 GJA4P35212 333 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 CXCL12P48061 93 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 TUBP50607 506 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 PMS1P54277 932 aaKnown RBP12.76□□□□□ -0.37
USP40-210ENST00000454354 NRLP54845 237 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 SATB1Q01826 763 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 ANKRD40Q6AI12 368 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 FSTL4Q6MZW2 842 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 FOXR2Q6PJQ5 311 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 TTC39CQ8N584 583 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 C12orf29Q8N999 325 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 CCDC150Q8NCX0 1101 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 FBXL13Q8NEE6 735 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 SCAMP5Q8TAC9 235 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms