RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 GMIPQ9P107 970 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 CHORDC1Q9UHD1 332 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 POLIQ9UNA4 740 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SNX7Q9UNH6 387 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 MTMR7Q9Y216 660 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 EMILIN1Q9Y6C2 1016 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SLC30A1Q9Y6M5 507 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 IVNS1ABPQ9Y6Y0 642 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SHPRHQ149N8 1683 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ERBB3P21860 1342 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 A6NJR5 290 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SPDYE16A6NNV3 312 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 ZBTB5O15062 677 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ZNF185O15231 689 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TNFRSF21O75509 655 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 B3GALNT1O75752 331 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TM7SF2O76062 418 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 OR7A10O76100 309 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 RXRBP28702 533 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 GTF2H1P32780 548 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ETV3P41162 512 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 STAT5AP42229 794 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 STARP49675 285 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 GPC3P51654 580 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 STAT5BP51692 787 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PGDP52209 483 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 MARSP56192 900 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 SESN2P58004 480 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 ERVK-24P63145 666 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 KDSRQ06136 332 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 NSUN2Q08J23 767 aaKnown RBP eCLIP2.28□□□□□ -2.04
USP53-202ENST00000450251 BNIP2Q12982 314 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 IFIT5Q13325 482 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 MTF1Q14872 753 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 HIF1AQ16665 826 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 DGKDQ16760 1214 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 HABP4Q5JVS0 413 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 FAM26FQ5R3K3 315 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SNAP47Q5SQN1 464 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 C12orf60Q5U649 245 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 CYP4F22Q6NT55 531 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 MZT2AQ6P582 158 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PIK3AP1Q6ZUJ8 805 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 MTDHQ86UE4 582 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 CCNJLQ8IV13 435 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 MICU2Q8IYU8 434 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SAMD14Q8IZD0 417 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 BLIDQ8IZY5 108 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 GUF1Q8N442 669 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 SFRP1Q8N474 314 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 GALNT4Q8N4A0 578 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 LRRN4CLQ8ND94 238 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 OR7A2PQ8NGA2 310 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 LILRB4Q8NHJ6 448 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SNIP1Q8TAD8 396 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 PI4K2BQ8TCG2 481 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PSPC1Q8WXF1 523 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 AP3S1Q92572 193 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 APOPT1Q96IL0 206 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PPP3R2Q96LZ3 170 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TCEANC2Q96MN5 208 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 MTMR9Q96QG7 549 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 HTATIP2Q9BUP3 242 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 KIAA1683Q9H0B3 1180 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 DDX43Q9NXZ2 648 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 USE1Q9NZ43 259 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 CLIC5Q9NZA1 410 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SMARCAL1Q9NZC9 954 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ANAPC2Q9UJX6 822 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 CNOT11Q9UKZ1 510 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 GRID1Q9ULK0 1009 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PEX16Q9Y5Y5 336 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 A0A1W2PP64 1363 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 GAKO14976 1311 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ESYT3A0FGR9 886 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 HEATR9A2RTY3 570 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 NFIBO00712 420 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SH2B2O14492 632 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 TRIM3O75382 744 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 SEC24AO95486 1093 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 FOSP01100 380 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 SERPINA6P08185 405 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SNRPAP09012 282 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 PRKAR1AP10644 381 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 CHRNB1P11230 501 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 GNAZP19086 355 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 EIF2AK2P19525 551 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 HMGB2P26583 209 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 GJC1P36383 396 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TGFBR2P37173 567 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 COILP38432 576 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 HADHAP40939 763 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 NPTX2P47972 431 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 DSTNP60981 165 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 LGALS3BPQ08380 585 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 COASYQ13057 564 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 NFE2Q16621 373 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 SMU1Q2TAY7 513 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ARCQ7LC44 396 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 KCNK18Q7Z418 384 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms