RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 COL19A1Q14993 1142 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 CTC1Q2NKJ3 1217 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 ACAD10Q6JQN1 1059 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 ANKRD54Q6NXT1 300 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 EP400NLQ6ZTU2 488 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 DENND5BQ6ZUT9 1274 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 ERICH1Q86X53 443 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 CCDC170Q8IYT3 715 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 CMASQ8NFW8 434 aaPredicted RBP16.64■□□□□ 0.25
USP40-206ENST00000443711 OLIG1Q8TAK6 271 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 CPA5Q8WXQ8 436 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 PSMG2Q969U7 264 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 PABPC5Q96DU9 382 aaKnown RBP16.64■□□□□ 0.25
USP40-206ENST00000443711 PPP1R13BQ96KQ4 1090 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 PPP1R9BQ96SB3 815 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 ST7Q9NRC1 585 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 CLDND1Q9NY35 253 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 A0A087X0T9 212 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 NRDCO43847 1150 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 RTN2O75298 545 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 PAPLNO95428 1278 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 FAM228BP0C875 321 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 PTPN2P17706 415 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 CYLC1P35663 651 aaPredicted RBP16.63■□□□□ 0.25
USP40-206ENST00000443711 NSFP46459 744 aaKnown RBP16.63■□□□□ 0.25
USP40-206ENST00000443711 RPL34P49207 117 aaKnown RBP16.63■□□□□ 0.25
USP40-206ENST00000443711 KIF11P52732 1056 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 SLC5A3P53794 718 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 CENPCQ03188 943 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 PDCLQ13371 301 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 CCDC85BQ15834 202 aaPredicted RBP16.63■□□□□ 0.25
USP40-206ENST00000443711 SLC18A3Q16572 532 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 ASTE1Q2TB18 679 aaPredicted RBP16.63■□□□□ 0.25
USP40-206ENST00000443711 RAB41Q5JT25 222 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 DNAJB7Q7Z6W7 309 aaPredicted RBP16.63■□□□□ 0.25
USP40-206ENST00000443711 TMEM110Q86TL2 294 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 LRRC8AQ8IWT6 810 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 SIX6OS1Q8N1H7 587 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 C12orf76Q8N812 135 aaPredicted RBP16.63■□□□□ 0.25
USP40-206ENST00000443711 CCDC112Q8NEF3 446 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 IPO4Q8TEX9 1081 aaKnown RBP16.63■□□□□ 0.25
USP40-206ENST00000443711 MIS12Q9H081 205 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 FBXO44Q9H4M3 255 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 SYNCQ9H7C4 482 aa16.63■□□□□ 0.25
USP40-206ENST00000443711 LCP1P13796 627 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 YWHAQP27348 245 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 TKTL1P51854 596 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 MTMR3Q13615 1198 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 RARS2Q5T160 578 aaKnown RBP16.62■□□□□ 0.25
USP40-206ENST00000443711 ALKBH5Q6P6C2 394 aaKnown RBP16.62■□□□□ 0.25
USP40-206ENST00000443711 GPRIN1Q7Z2K8 1008 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 PHF13Q86YI8 300 aaPredicted RBP16.62■□□□□ 0.25
USP40-206ENST00000443711 TMEM139Q8IV31 216 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 SCAMP5Q8TAC9 235 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 SMG7Q92540 1137 aaKnown RBP16.62■□□□□ 0.25
USP40-206ENST00000443711 TRMT2BQ96GJ1 504 aaKnown RBP16.62■□□□□ 0.25
USP40-206ENST00000443711 CPXM1Q96SM3 734 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 TTLL2Q9BWV7 592 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 PIDD1Q9HB75 910 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 IL37Q9NZH6 218 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 CLEC1BQ9P126 229 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 UXTQ9UBK9 157 aaPredicted RBP16.62■□□□□ 0.25
USP40-206ENST00000443711 NAGPAQ9UK23 515 aa16.62■□□□□ 0.25
USP40-206ENST00000443711 MAGED2Q9UNF1 606 aaPredicted RBP16.62■□□□□ 0.25
USP40-206ENST00000443711 TMCO5BA8MYB1 307 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 GABBR2O75899 941 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 FBXO21O94952 628 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 FTLP02792 175 aaPredicted RBP16.61■□□□□ 0.25
USP40-206ENST00000443711 HMGA1P17096 107 aaKnown RBP16.61■□□□□ 0.25
USP40-206ENST00000443711 MMP8P22894 467 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 GABRB2P47870 512 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 GFPT1Q06210 699 aaPredicted RBP16.61■□□□□ 0.25
USP40-206ENST00000443711 ADIGQ0VDE8 80 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 IFRD2Q12894 506 aaPredicted RBP16.61■□□□□ 0.25
USP40-206ENST00000443711 PTPN20Q4JDL3 420 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 CCDC122Q5T0U0 273 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 SYCE2Q6PIF2 218 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 TMC5Q6UXY8 1006 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 SCML4Q8N228 414 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 STKLD1Q8NE28 680 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 PPM1EQ8WY54 764 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 ZNF707Q96C28 371 aaPredicted RBP16.61■□□□□ 0.25
USP40-206ENST00000443711 C18orf8Q96DM3 657 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 VCPIP1Q96JH7 1222 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 MYRFLQ96LU7 910 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 ULBP1Q9BZM6 244 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 ISCUQ9H1K1 167 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 CNGB3Q9NQW8 809 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 TAS2R14Q9NYV8 317 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 ADAM22Q9P0K1 906 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 SCML2Q9UQR0 700 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 USP3Q9Y6I4 520 aa16.61■□□□□ 0.25
USP40-206ENST00000443711 DOCK6Q96HP0 2047 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 FAM92AA1XBS5 289 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 SOWAHDA6NJG2 315 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 E5RJQ4 531 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 PIK3R2O00459 728 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 SART1O43290 800 aaKnown RBP16.6■□□□□ 0.25
USP40-206ENST00000443711 TBX10O75333 385 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 FGF19O95750 216 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms