RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CCT7Q99832 543 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 VPS33BQ9H267 617 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 AGPAT3Q9NRZ7 376 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 APPL1Q9UKG1 709 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 VPS9D1Q9Y2B5 631 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 DYRK3O43781 588 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 KLRK1P26718 216 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 EPHB3P54753 998 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 STARD3Q14849 445 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 ATG4AQ8WYN0 398 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 UNKQ9C0B0 810 aaKnown RBP15.93■□□□□ 0.14
PTPRF-206ENST00000429895 TRPM5Q9NZQ8 1165 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 PADI4Q9UM07 663 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 FGFR1P11362 822 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 ACER1Q8TDN7 264 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 RUBCNQ92622 972 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 POP1Q99575 1024 aaKnown RBP15.93■□□□□ 0.14
PTPRF-206ENST00000429895 ZDHHC9Q9Y397 364 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 POU1F1P28069 291 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 CCDC3Q9BQI4 270 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 NMRK1Q9NWW6 199 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 GNG14A0A1W2PPG7 69 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 FAM47E-STBD1D6RA91 191 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 USP1O94782 785 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 ALBP02768 609 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 GSTM1P09488 218 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 SNRPFP62306 86 aaKnown RBP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 TMEM154Q6P9G4 183 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 SLFN11Q7Z7L1 901 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 USP13Q92995 863 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 ZNF333Q96JL9 665 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 KRCC1Q9NPI7 259 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 P4HA2O15460 535 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 CSDE1O75534 798 aaKnown RBP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 ITGB6P18564 788 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 KLRC1P26715 233 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 RAD9BQ6WBX8 426 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 FAM172AQ8WUF8 416 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 STARD7Q9NQZ5 370 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 KDM6BO15054 1643 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 SLC26A4O43511 780 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 FXR2P51116 673 aaKnown RBP eCLIP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 ANTXR2P58335 489 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 RABL6Q3YEC7 729 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 FBXW10Q5XX13 1052 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 CCNI2Q6ZMN8 369 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 ARID3BQ8IVW6 561 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 MRPL42Q9Y6G3 142 aaKnown RBP15.92■□□□□ 0.14
PTPRF-206ENST00000429895 NTSR2O95665 410 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 PSMA3P25788 255 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 BFSP2Q13515 415 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 WLSQ5T9L3 541 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 OLFML2BQ68BL8 750 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 MDM1Q8TC05 714 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 CENPTQ96BT3 561 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 CLPBQ9H078 707 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 NT5MQ9NPB1 228 aa15.92■□□□□ 0.14
PTPRF-206ENST00000429895 SFSWAPQ12872 951 aaKnown RBP15.91■□□□□ 0.14
PTPRF-206ENST00000429895 SLC29A2Q14542 456 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 C9orf131Q5VYM1 1079 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 MPZL3Q6UWV2 235 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 NT5DC3Q86UY8 548 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 CACUL1Q86Y37 369 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 CBWD2Q8IUF1 395 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 ERP44Q9BS26 406 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 CAAP1Q9H8G2 361 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 AAR2Q9Y312 384 aaKnown RBP15.91■□□□□ 0.14
PTPRF-206ENST00000429895 LAMC1P11047 1609 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 LINC00854A0A1B0GVQ3 168 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 TSPAN3O60637 253 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 NBNO60934 754 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 STAU1O95793 577 aaKnown RBP15.91■□□□□ 0.14
PTPRF-206ENST00000429895 GRK3P35626 688 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 ITPK1Q13572 414 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 BOLA3Q53S33 107 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 TMC7Q7Z402 723 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 USP38Q8NB14 1042 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 PIF1Q9H611 641 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 UBP1Q9NZI7 540 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 MPP6Q9NZW5 540 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 TIMM13Q9Y5L4 95 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-206ENST00000429895 FYNP06241 537 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 CYP2C8P10632 490 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 USP39Q53GS9 565 aaKnown RBP15.91■□□□□ 0.14
PTPRF-206ENST00000429895 ZNF484Q5JVG2 852 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 C4orf22Q6V702 233 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 ZIM3Q96PE6 472 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 MBD5Q9P267 1494 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 TNNI3P19429 210 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 MLH1P40692 756 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 TRIM28Q13263 835 aaKnown RBP15.91■□□□□ 0.14
PTPRF-206ENST00000429895 AGBL2Q5U5Z8 902 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 TRPM8Q7Z2W7 1104 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 MMGT1Q8N4V1 131 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 NSL1Q96IY1 281 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 EMILIN2Q9BXX0 1053 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 CNTNAP2Q9UHC6 1331 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 OGTO15294 1046 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 POMCP01189 267 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 HALP42357 657 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms