RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 KMT5BQ4FZB7 885 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 NAIF1Q69YI7 327 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 DDX42Q86XP3 938 aaKnown RBP eCLIP12.29□□□□□ -0.442e-11■□□□□ 10.2
SQSTM1-203ENST00000422245 CAMKK1Q8N5S9 505 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 PDZD8Q8NEN9 1154 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 NETO1Q8TDF5 533 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 OVCA2Q8WZ82 227 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 LOXL4Q96JB6 756 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 TNIP3Q96KP6 325 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 RTKNQ9BST9 563 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 B3GNT5Q9BYG0 378 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 KCTD10Q9H3F6 313 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 DMAP1Q9NPF5 467 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 SEMA4GQ9NTN9 838 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 DMAC2Q9NW81 257 aa12.29□□□□□ -0.44
SQSTM1-203ENST00000422245 MYO16Q9Y6X6 1858 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 PDXKO00764 312 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 SLC9A3R1O14745 358 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 RPP40O75818 363 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 NR3C1P04150 777 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 RPN1P04843 607 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 YWHAQP27348 245 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 CACNA2D1P54289 1103 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 TAF10Q12962 218 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 SCARA5Q6ZMJ2 495 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 PRR23CQ6ZRP0 262 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 SYT13Q7L8C5 426 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 CACNA2D4Q7Z3S7 1137 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 FAM35AQ86V20 835 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 NUP93Q8N1F7 819 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 FAM160A2Q8N612 972 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 RPLP0P6Q8NHW5 317 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 TMC2Q8TDI7 906 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 TAF4BQ92750 862 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 CCDC47Q96A33 483 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 SMARCD1Q96GM5 515 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 SPATA32Q96LK8 384 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 FBRSL1Q9HCM7 1045 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 TMEM30AQ9NV96 361 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 HPSEQ9Y251 543 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 FRMD4BQ9Y2L6 1034 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 CPQQ9Y646 472 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 ATG2BQ96BY7 2078 aa12.28□□□□□ -0.44
SQSTM1-203ENST00000422245 A0A1B0GVL5 298 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 CLDN5O00501 218 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 CALUO43852 315 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 VNN1O95497 513 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 APBB3O95704 486 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 ABL1P00519 1130 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 C4BPAP04003 597 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 CYP17A1P05093 508 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 CCDC192P0DO97 292 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 TRIM21P19474 475 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 RAP1GAPP47736 663 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 PXNP49023 591 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 TUBP50607 506 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 SLC5A3P53794 718 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 ATXN1P54253 815 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 ZXDBP98169 803 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 IFRD2Q12894 506 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 ZACNQ401N2 412 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 FILIP1Q7Z7B0 1213 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 SPRYD3Q8NCJ5 442 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 EZH1Q92800 747 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 FBXO32Q969P5 355 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 HHIPQ96QV1 700 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 MED10Q9BTT4 135 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 KRT82Q9NSB4 513 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 SMPD4Q9NXE4 827 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 SPTBN2O15020 2390 aa12.27□□□□□ -0.45
SQSTM1-203ENST00000422245 FAM237AA0A1B0GTK4 181 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 SLC30A4O14863 429 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 IKBKBO14920 756 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 AXIN1O15169 862 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 MAPK13O15264 365 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 EPN2O95208 641 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 ADH1CP00326 375 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 MBL2P11226 248 aaPredicted RBP12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 HOXC13P31276 330 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 OPRD1P41143 372 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 PIK3CAP42336 1068 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 SYKP43405 635 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 DMC1Q14565 340 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 NFIL3Q16649 462 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 SGSM1Q2NKQ1 1148 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 UNC93AQ86WB7 457 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 IMPG2Q9BZV3 1241 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 RNF38Q9H0F5 515 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 LINC00597Q9H2U6 94 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 COMMD8Q9NX08 183 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 CFAP97Q9P2B7 532 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 TBC1D14Q9P2M4 693 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 EBF1Q9UH73 591 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 TRAF3IP3Q9Y228 551 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 PCDHGA5Q9Y5G8 931 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 ATP6V1DQ9Y5K8 247 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 EML5Q05BV3 1969 aa12.26□□□□□ -0.45
SQSTM1-203ENST00000422245 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-203ENST00000422245 AP1G2O75843 785 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms