RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 TFAP2BQ92481 460 aa11.91□□□□□ -0.5
SNX13-202ENST00000409604 MFSD14AQ96MC6 490 aa11.91□□□□□ -0.5
SNX13-202ENST00000409604 VANGL2Q9ULK5 521 aa11.91□□□□□ -0.5
SNX13-202ENST00000409604 USP18Q9UMW8 372 aa11.91□□□□□ -0.5
SNX13-202ENST00000409604 MRFAP1Q9Y605 127 aa11.91□□□□□ -0.5
SNX13-202ENST00000409604 DNAJC25-GNG10A0A024R161 153 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 GTPBP10A4D1E9 387 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 H0Y626 953 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 ADCY6O43306 1168 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 MSI1O43347 362 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 NOL4O94818 638 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 IQCF3P0C7M6 154 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 AMPD1P23109 780 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 CTCFP49711 727 aaPredicted RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 FMO1Q01740 532 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 PDCLQ13371 301 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 BMT2Q1RMZ1 405 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 P3H1Q32P28 736 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 ZC3H12AQ5D1E8 599 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 CARNMT1Q8N4J0 409 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 PPM1NQ8N819 430 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 IPMKQ8NFU5 416 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 AFAP1L1Q8TED9 768 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 L1RE1Q9UN81 338 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 PTPRJQ12913 1337 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 SCN7AQ01118 1682 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 EXOC1LA0A1B0GW35 172 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 GJA1P17302 382 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 EDNRBP24530 442 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 ATICP31939 592 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 CARSP49589 748 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 TBX2Q13207 712 aaPredicted RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 POM121L1PQ3SYA9 428 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 EPM2AIP1Q7L775 607 aaPredicted RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 ELOVL4Q9GZR5 314 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 CYP3A43Q9HB55 503 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 ALG13Q9NP73 1137 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 G3BP2Q9UN86 482 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 MOXD2PA6NHM9 499 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 PER2O15055 1255 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 RAD51CO43502 376 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 PIAS1O75925 651 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 C4BPAP04003 597 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 PMLP29590 882 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 MXRA7P84157 204 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 TMPRSS15P98073 1019 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 MAPRE1Q15691 268 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 IRF2BP2Q7Z5L9 587 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 PCGF5Q86SE9 256 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 SLC9A9Q8IVB4 645 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 MSL3Q8N5Y2 521 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 SHC3Q92529 594 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 PLCD4Q9BRC7 762 aa11.9□□□□□ -0.5
SNX13-202ENST00000409604 MRPL17Q9NRX2 175 aaKnown RBP11.9□□□□□ -0.5
SNX13-202ENST00000409604 GOLGA6L7A0A1B0GV03 622 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 ANO9A1A5B4 782 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 IVLP07476 585 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 PYGMP11217 842 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 LMNB2Q03252 620 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 CDH18Q13634 790 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 TARBP2Q15633 366 aaKnown RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 FIGNQ5HY92 759 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 PPP1R2P3Q6NXS1 205 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 JOSD2Q8TAC2 188 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 IFT43Q96FT9 208 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 AP4E1Q9UPM8 1137 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 CBX4O00257 560 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 WNT7BP56706 349 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 PSMD5Q16401 504 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 TIGD5Q53EQ6 642 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 TAS1R3Q7RTX0 852 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 ZNF467Q7Z7K2 595 aaPredicted RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 TWNKQ96RR1 684 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 CPXM1Q96SM3 734 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 KLF6Q99612 283 aaPredicted RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 DMAP1Q9NPF5 467 aaPredicted RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 LSM7Q9UK45 103 aaKnown RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 SPTBN2O15020 2390 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 TULP2O00295 520 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 HSPA6P17066 643 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 YWHAQP27348 245 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 MIPP30301 263 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 ACADSBP45954 432 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 MMRN1Q13201 1228 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 CCDC85BQ15834 202 aaPredicted RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 CFAP157Q5JU67 520 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 ELMSAN1Q6PJG2 1045 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 MFSD7Q6UXD7 560 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 ZNF280BQ86YH2 543 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 CRYGNQ8WXF5 182 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 KAT2BQ92831 832 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 NTPCRQ9BSD7 190 aaKnown RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 KLC2Q9H0B6 622 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 C11orf49Q9H6J7 331 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 DNAJB4Q9UDY4 337 aa11.89□□□□□ -0.51
SNX13-202ENST00000409604 DMGDHQ9UI17 866 aaKnown RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 NOVA2Q9UNW9 492 aaKnown RBP11.89□□□□□ -0.51
SNX13-202ENST00000409604 SF3B1O75533 1304 aaKnown RBP eCLIP11.89□□□□□ -0.515e-6■■■■■ 63.7
SNX13-202ENST00000409604 CRCPO75575 148 aa11.88□□□□□ -0.51
SNX13-202ENST00000409604 TKTP29401 623 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms