RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PER2O15055 1255 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 ABLIM3O94929 683 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 ADH1AP07327 375 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 VDRP11473 427 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 CD19P15391 556 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 OAS2P29728 719 aaKnown RBP14.16□□□□□ -0.14
LIMS1-204ENST00000409441 HADHBP55084 474 aaKnown RBP14.16□□□□□ -0.14
LIMS1-204ENST00000409441 ROR1Q01973 937 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 MAPRE1Q15691 268 aaKnown RBP14.16□□□□□ -0.14
LIMS1-204ENST00000409441 NFE2Q16621 373 aaPredicted RBP14.16□□□□□ -0.14
LIMS1-204ENST00000409441 GPR153Q6NV75 609 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 C8orf74Q6P047 294 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 RBM23Q86U06 439 aaKnown RBP14.16□□□□□ -0.14
LIMS1-204ENST00000409441 SLC47A2Q86VL8 602 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 ACTRT1Q8TDG2 376 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 TFAP2BQ92481 460 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 CYFIP2Q96F07 1278 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 PGLYRP2Q96PD5 576 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 TLE6Q9H808 572 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 FAM49BQ9NUQ9 324 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 LMCD1Q9NZU5 365 aa14.16□□□□□ -0.14
LIMS1-204ENST00000409441 WDR27A2RRH5 827 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 CLASP2O75122 1294 aaKnown RBP14.15□□□□□ -0.14
LIMS1-204ENST00000409441 GABBR2O75899 941 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 SMARCB1Q12824 385 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 SGO2Q562F6 1265 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 TPGS2Q68CL5 300 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 RNF19BQ6ZMZ0 732 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 PEX26Q7Z412 305 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 ADGRD2Q7Z7M1 963 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 RHOT2Q8IXI1 618 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 ATAD1Q8NBU5 361 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 ZNF606Q8WXB4 792 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 PCED1BQ96HM7 432 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 LRRC1Q9BTT6 524 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 B3GNT5Q9BYG0 378 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 ISCUQ9H1K1 167 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 RBM12Q9NTZ6 932 aaKnown RBP14.15□□□□□ -0.14
LIMS1-204ENST00000409441 STIM2Q9P246 746 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 AMFRQ9UKV5 643 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 TGM5O43548 720 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 SPATA31D3P0C874 917 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 GZMAP12544 262 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 CCDC130P13994 396 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 ATF2P15336 505 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 CYP11B1P15538 503 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 GNA15P30679 374 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 DMTNQ08495 405 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 ADCY1Q08828 1119 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 ADGRE1Q14246 886 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 TERF2Q15554 542 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 PPP1R26Q5T8A7 1209 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-204ENST00000409441 LILRA6Q6PI73 481 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 C4orf50Q6ZRC1 276 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 SPATA31D4Q6ZUB0 917 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 Q7L0L9 218 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 NT5DC3Q86UY8 548 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 SPATA2LQ8IUW3 424 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-204ENST00000409441 FUKQ8N0W3 1084 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 SLC2A14Q8TDB8 520 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 MYLPFQ96A32 169 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 MS4A14Q96JA4 679 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 HNRNPABQ99729 332 aaKnown RBP14.15□□□□□ -0.14
LIMS1-204ENST00000409441 ZSWIM1Q9BR11 485 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 AFF4Q9UHB7 1163 aaKnown RBP14.15□□□□□ -0.14
LIMS1-204ENST00000409441 TMEM59LQ9UK28 342 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 PCDHB5Q9Y5E4 795 aa14.15□□□□□ -0.14
LIMS1-204ENST00000409441 MYO9BQ13459 2157 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 CLDN5O00501 218 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 KCNK3O14649 394 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 THAP12O43422 761 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 RTN2O75298 545 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 POU3F3P20264 500 aaPredicted RBP14.14□□□□□ -0.15
LIMS1-204ENST00000409441 IGFBP4P22692 258 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 BRD2P25440 801 aaKnown RBP14.14□□□□□ -0.15
LIMS1-204ENST00000409441 ADORA2BP29275 332 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 NRIP1P48552 1158 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 DUSP4Q13115 394 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 CNGA2Q16280 664 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 ARHGAP17Q68EM7 881 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 PAQR9Q6ZVX9 377 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 DAAM2Q86T65 1068 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 RASGEF1CQ8N431 466 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 SLC35G2Q8TBE7 412 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 AENQ8WTP8 325 aaKnown RBP14.14□□□□□ -0.15
LIMS1-204ENST00000409441 C2orf15Q8WU43 125 aaKnown RBP14.14□□□□□ -0.15
LIMS1-204ENST00000409441 HES6Q96HZ4 224 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 MED10Q9BTT4 135 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 NSUN3Q9H649 340 aaKnown RBP14.14□□□□□ -0.15
LIMS1-204ENST00000409441 ABI2Q9NYB9 513 aaPredicted RBP14.14□□□□□ -0.15
LIMS1-204ENST00000409441 EHD2Q9NZN4 543 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 PACSIN2Q9UNF0 486 aaPredicted RBP14.14□□□□□ -0.15
LIMS1-204ENST00000409441 SLC27A5Q9Y2P5 690 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 MTCH2Q9Y6C9 303 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 MYO7AQ13402 2215 aa14.14□□□□□ -0.15
LIMS1-204ENST00000409441 MTMR11A4FU01 709 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 CCDC188H7C350 402 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 O00370 1275 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 MED7O43513 233 aa14.13□□□□□ -0.15
LIMS1-204ENST00000409441 VNN2O95498 520 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms