RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SLC18A1P54219 525 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 ARHGAP8P85298 464 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 TFAMQ00059 246 aaKnown RBP21.9■■□□□ 1.1
CTCF-202ENST00000401394 DPYSL3Q14195 570 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 RIPOR1Q6ZS17 1223 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 PDIK1LQ8N165 341 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 TUBGCP5Q96RT8 1024 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 CPXM1Q96SM3 734 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 VPS11Q9H270 941 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 SMYD3Q9H7B4 428 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 STK10O94804 968 aaKnown RBP21.9■■□□□ 1.1
CTCF-202ENST00000401394 FESP07332 822 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 CD1EP15812 388 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 KDELR1P24390 212 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 CLDN10P78369 228 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 MRPS5P82675 430 aaKnown RBP21.9■■□□□ 1.1
CTCF-202ENST00000401394 TRMT10BQ6PF06 316 aaKnown RBP21.9■■□□□ 1.1
CTCF-202ENST00000401394 DRICH1Q6PGQ1 229 aaPredicted RBP21.9■■□□□ 1.1
CTCF-202ENST00000401394 IZUMO2Q6UXV1 221 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 KCTD6Q8NC69 237 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 PLAC1Q9HBJ0 212 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 CEP350Q5VT06 3117 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 E7ENQ6 273 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 CSDE1O75534 798 aaKnown RBP21.9■■□□□ 1.1
CTCF-202ENST00000401394 INHBAP08476 426 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 KRT3P12035 628 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 RAB27AP51159 221 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 AQP5P55064 265 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 TMPRSS15P98073 1019 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 CHI3L2Q15782 390 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 C16orf46Q6P387 395 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 CCDC62Q6P9F0 684 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 NLGN1Q8N2Q7 840 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 CFAP61Q8NHU2 1237 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 PEBP4Q96S96 227 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 SH3GL3Q99963 347 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 SYNCQ9H7C4 482 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 COL11A2P13942 1736 aaPredicted RBP21.9■■□□□ 1.1
CTCF-202ENST00000401394 NFASCO94856 1347 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 DGAT1O75907 488 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 PHBP35232 272 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 SLC25A3Q00325 362 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 MROH9Q5TGP6 573 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 ATG14Q6ZNE5 492 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 MCF2L2Q86YR7 1114 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 GSTCDQ8NEC7 633 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 RNF217Q8TC41 542 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 PYDC1Q8WXC3 89 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 RNF146Q9NTX7 359 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 IL1RAPL1Q9NZN1 696 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 LRCH1Q9Y2L9 728 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 IKBKGQ9Y6K9 419 aa21.89■■□□□ 1.1
CTCF-202ENST00000401394 GRIA1P42261 906 aa21.89■■□□□ 1.09
CTCF-202ENST00000401394 ZNF200P98182 395 aaPredicted RBP21.89■■□□□ 1.09
CTCF-202ENST00000401394 C15orf59Q2T9L4 293 aaPredicted RBP21.89■■□□□ 1.09
CTCF-202ENST00000401394 AP1ARQ63HQ0 302 aa21.89■■□□□ 1.09
CTCF-202ENST00000401394 DEPTORQ8TB45 409 aa21.89■■□□□ 1.09
CTCF-202ENST00000401394 FOXP3Q9BZS1 431 aa21.89■■□□□ 1.09
CTCF-202ENST00000401394 ACSS2Q9NR19 701 aa21.89■■□□□ 1.09
CTCF-202ENST00000401394 SLC7A8Q9UHI5 535 aa21.89■■□□□ 1.09
CTCF-202ENST00000401394 CTDP1Q9Y5B0 961 aaPredicted RBP21.89■■□□□ 1.09
CTCF-202ENST00000401394 H0YIN7 160 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 MCCD1P59942 119 aaPredicted RBP21.88■■□□□ 1.09
CTCF-202ENST00000401394 PSMC1P62191 440 aaKnown RBP21.88■■□□□ 1.09
CTCF-202ENST00000401394 RALGPS1Q5JS13 557 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 NIPA1Q7RTP0 329 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 LARGE2Q8N3Y3 721 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 AKT1S1Q96B36 256 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 IFT43Q96FT9 208 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 VCPIP1Q96JH7 1222 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 IMPG2Q9BZV3 1241 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 RPAP3Q9H6T3 665 aaPredicted RBP21.88■■□□□ 1.09
CTCF-202ENST00000401394 JPH1Q9HDC5 661 aaPredicted RBP21.88■■□□□ 1.09
CTCF-202ENST00000401394 PCMTD2Q9NV79 361 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 STAM2O75886 525 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 DHRS4L1P0CG22 281 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 SFNP31947 248 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 DARS2Q6PI48 645 aaKnown RBP21.88■■□□□ 1.09
CTCF-202ENST00000401394 RAPH1Q70E73 1250 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 VSIG10LQ86VR7 867 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 TMEM192Q8IY95 271 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 MPP5Q8N3R9 675 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 CCDC124Q96CT7 223 aaKnown RBP21.88■■□□□ 1.09
CTCF-202ENST00000401394 APOPT1Q96IL0 206 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 TWNKQ96RR1 684 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 CNTN3Q9P232 1028 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 HEY1Q9Y5J3 304 aa21.88■■□□□ 1.09
CTCF-202ENST00000401394 ZMPSTE24O75844 475 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 NPTXRO95502 500 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 ERBB2P04626 1255 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 MIPP30301 263 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 ZNF132P52740 706 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 TRIM72Q6ZMU5 477 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 POLNQ7Z5Q5 900 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 THNSL1Q8IYQ7 743 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 OCEL1Q9H607 264 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 RAB6BQ9NRW1 208 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 SCOCQ9UIL1 159 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 DNAH12Q6ZR08 3092 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 A0A0B4J269 797 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms