RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SLC26A9Q7LBE3 791 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 ZNF571Q7Z3V5 609 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 ACOT1Q86TX2 421 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 SPATA2LQ8IUW3 424 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 OR6B3Q8NGW1 331 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 SLC2A14Q8TDB8 520 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 AUTS2Q8WXX7 1259 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 TRIM62Q9BVG3 475 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 GRPEL1Q9HAV7 217 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 RRN3Q9NYV6 651 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 NXF1Q9UBU9 619 aaKnown RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 DOCK8Q8NF50 2099 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 DDX3XO00571 662 aaKnown RBP eCLIP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 CYP1A2P05177 515 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 C8AP07357 584 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 PTPN2P17706 415 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 KLRC2P26717 231 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 DAOAP59103 153 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 ACAD10Q6JQN1 1059 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 TMEM270Q6UE05 265 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 Q6ZNB5 142 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 SCD5Q86SK9 330 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 OR8K1Q8NGG5 319 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 SECISBP2LQ93073 1101 aaKnown RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 MIS12Q9H081 205 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 KIF9Q9HAQ2 790 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 ZNF334Q9HCZ1 680 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 WDR35Q9P2L0 1181 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 GTF3C4Q9UKN8 822 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 TIMM13Q9Y5L4 95 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 ARNTLO00327 626 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 NRG2O14511 850 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-202ENST00000394943 XYLBO75191 536 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 FYNP06241 537 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 CDC25CP30307 473 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 PDCLQ13371 301 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 SFMBT2Q5VUG0 894 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 OTUD1Q5VV17 481 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-202ENST00000394943 DENND1BQ6P3S1 775 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 TTC9BQ8N6N2 239 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 C12orf29Q8N999 325 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 ZNF197O14709 1029 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 CYP26A1O43174 497 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 ECI2O75521 394 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 CCDC130P13994 396 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 VASPP50552 380 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-202ENST00000394943 RING1Q06587 406 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 GOLGA7BQ2TAP0 167 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 PABPC1LQ4VXU2 614 aaKnown RBP7.4□□□□□ -1.22
LIMA1-202ENST00000394943 GPRIN1Q7Z2K8 1008 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 VSIG1Q86XK7 387 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 XYLT1Q86Y38 959 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 ADAMTS19Q8TE59 1207 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 SLC39A13Q96H72 371 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 MMS19Q96T76 1030 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 CRACR2AQ9BSW2 395 aa7.4□□□□□ -1.22
LIMA1-202ENST00000394943 ZNF840PA6NDX5 716 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 AKR1B15C9JRZ8 316 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-202ENST00000394943 SART1O43290 800 aaKnown RBP7.4□□□□□ -1.23
LIMA1-202ENST00000394943 DAB1O75553 588 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 CFHP08603 1231 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 FOSL2P15408 326 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 RPL17P18621 184 aaKnown RBP7.4□□□□□ -1.23
LIMA1-202ENST00000394943 CYP2F1P24903 491 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 SLC5A3P53794 718 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 EPHB3P54753 998 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 GSDMDP57764 484 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 DLX2Q07687 328 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-202ENST00000394943 PDE4CQ08493 712 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 PMF1Q6P1K2 205 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 GAREM2Q75VX8 874 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 MON1AQ86VX9 555 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 SHKBP1Q8TBC3 707 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 ELSPBP1Q96BH3 223 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 RIPOR3Q96MK2 946 aa7.4□□□□□ -1.23
LIMA1-202ENST00000394943 PDE4DIPQ5VU43 2346 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF487B1APH4 448 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 EIF3CLB5ME19 914 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 RTN2O75298 545 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 OR4Q2P0C623 313 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 ACAT1P24752 427 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 CASP14P31944 242 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MAN1A1P33908 653 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 GTF2F1P35269 517 aaKnown RBP eCLIP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 CCR2P41597 374 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 PTPN9P43378 593 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MRPS5P82675 430 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 FCHO2Q0JRZ9 810 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 TWF1Q12792 350 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 DUSP4Q13115 394 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 ACAP1Q15027 740 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 TRIP4Q15650 581 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 SLC18A3Q16572 532 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 CCDC142Q17RM4 750 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 PPM1LQ5SGD2 360 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 Q7L0L9 218 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 DNAJB7Q7Z6W7 309 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF687Q8N1G0 1237 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 HLA-CQ95604 372 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 TRIM11Q96F44 468 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms