RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 KCNK16Q96T55 309 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 CHST12Q9NRB3 414 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 CDK5RAP2Q96SN8 1893 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 VDRP11473 427 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 EPHB2P29323 1055 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 GBP1P32455 592 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 SLC18A3Q16572 532 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 PIGZQ86VD9 579 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 LRRN4Q8WUT4 740 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 C1orf54Q8WWF1 131 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 ZMAT2Q96NC0 199 aaKnown RBP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 GAS2L1Q99501 681 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 PARVAQ9NVD7 372 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 TMEM161AQ9NX61 479 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 TAS2R14Q9NYV8 317 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 SNX12Q9UMY4 172 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 CHUKO15111 745 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 MICAL2O94851 1124 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 AP1B1Q10567 949 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 TSTA3Q13630 321 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 MAPRE1Q15691 268 aaKnown RBP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 PPP1R26Q5T8A7 1209 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 CES5AQ6NT32 575 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 PSRC1Q6PGN9 363 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 DCLRE1AQ6PJP8 1040 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 NOP9Q86U38 636 aaKnown RBP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 MAB21L3Q8N8X9 362 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 FBXO22Q8NEZ5 403 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 GDAP1Q8TB36 358 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 MIOSQ9NXC5 875 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 INSL6Q9Y581 213 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 COL24A1Q17RW2 1714 aa10.77□□□□□ -0.68
COL6A3-205ENST00000392004 PDE2AO00408 941 aaPredicted RBP10.77□□□□□ -0.68
COL6A3-205ENST00000392004 RECQLP46063 649 aaPredicted RBP10.77□□□□□ -0.68
COL6A3-205ENST00000392004 SEPT6Q14141 434 aa10.77□□□□□ -0.68
COL6A3-205ENST00000392004 VARS2Q5ST30 1063 aaKnown RBP10.77□□□□□ -0.68
COL6A3-205ENST00000392004 MARCH8Q5T0T0 291 aa10.77□□□□□ -0.68
COL6A3-205ENST00000392004 ARFGAP2Q8N6H7 521 aa10.77□□□□□ -0.68
COL6A3-205ENST00000392004 SPATA4Q8NEY3 305 aa10.77□□□□□ -0.68
COL6A3-205ENST00000392004 UBLCP1Q8WVY7 318 aaPredicted RBP10.77□□□□□ -0.68
COL6A3-205ENST00000392004 LACRTQ9GZZ8 138 aa10.77□□□□□ -0.68
COL6A3-205ENST00000392004 ARHGAP20Q9P2F6 1191 aa10.77□□□□□ -0.68
COL6A3-205ENST00000392004 LSM7Q9UK45 103 aaKnown RBP10.77□□□□□ -0.68
COL6A3-205ENST00000392004 ADH1AP07327 375 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 GLUD2P49448 558 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 HARS2P49590 506 aaKnown RBP10.77□□□□□ -0.69
COL6A3-205ENST00000392004 RPL10AP62906 217 aaKnown RBP10.77□□□□□ -0.69
COL6A3-205ENST00000392004 KCNMA1Q12791 1236 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 PDZD4Q76G19 769 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-205ENST00000392004 GET4Q7L5D6 327 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-205ENST00000392004 RPAINQ86UA6 219 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 SKA2Q8WVK7 121 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-205ENST00000392004 ARL8AQ96BM9 186 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 MCRS1Q96EZ8 462 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 OSBPL7Q9BZF2 842 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 MUC3BQ9H195 1237 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 PLEKHA5Q9HAU0 1116 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 GLUD1P00367 558 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 GABRR2P28476 465 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 SLC11A1P49279 550 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 BCAT1P54687 386 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 AGMOQ6ZNB7 445 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 DENND5BQ6ZUT9 1274 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 TTC39CQ8N584 583 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 HMGXB4Q9UGU5 601 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 DMGDHQ9UI17 866 aaKnown RBP10.77□□□□□ -0.69
COL6A3-205ENST00000392004 TSR3Q9UJK0 312 aaKnown RBP10.77□□□□□ -0.69
COL6A3-205ENST00000392004 MYH7P12883 1935 aa10.77□□□□□ -0.69
COL6A3-205ENST00000392004 EP300Q09472 2414 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 KIF1CO43896 1103 aaKnown RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 MGEA5O60502 916 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 RTN2O75298 545 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 GAS8O95995 478 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 HDCP19113 662 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 YWHAQP27348 245 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 TPI1P60174 286 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 SKOR1P84550 965 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CAP1Q01518 475 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CDR2Q01850 454 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CNKSR3Q6P9H4 555 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 TAS1R3Q7RTX0 852 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CCDC26Q8TAB7 109 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 DYDC1Q8WWB3 177 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 RXFP2Q8WXD0 754 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 LRRC45Q96CN5 670 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 MS4A14Q96JA4 679 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 NTPCRQ9BSD7 190 aaKnown RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 WDCPQ9H6R7 721 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 ABCF3Q9NUQ8 709 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 KLHL8Q9P2G9 620 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CACNA1GO43497 2377 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 MYH4Q9Y623 1939 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 ZBED1O96006 694 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 RWDD2BP57060 319 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 IFT88Q13099 833 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CEP85LQ5SZL2 805 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 LHX8Q68G74 356 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 ZNF662Q6ZS27 426 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 SH2D3CQ8N5H7 860 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms