RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TRIM67Q6ZTA4 783 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 APTXQ7Z2E3 356 aaKnown RBP14.13□□□□□ -0.15
VPS28-202ENST00000377348 MON1AQ86VX9 555 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 CMTM8Q8IZV2 173 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 UBA3Q8TBC4 463 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 LRRC3BQ96PB8 259 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 SLC22A12Q96S37 553 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 CYP2S1Q96SQ9 504 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 TRPV4Q9HBA0 871 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 ACP6Q9NPH0 428 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 IL37Q9NZH6 218 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 TRPM5Q9NZQ8 1165 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 DNAJC12Q9UKB3 198 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 ZNF840PA6NDX5 716 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 HEPACAM2A8MVW5 462 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 ABL1P00519 1130 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 TPM2P07951 284 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 PNMA6AP0CW24 399 aaPredicted RBP14.12□□□□□ -0.15
VPS28-202ENST00000377348 SRFP11831 508 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 DDX6P26196 483 aaKnown RBP eCLIP14.12□□□□□ -0.15
VPS28-202ENST00000377348 PGFP49763 221 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 PDE4CQ08493 712 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 SIGLEC14Q08ET2 396 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 IER5LQ5T953 404 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 ENOSF1Q7L5Y1 443 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 PIGZQ86VD9 579 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 UBALD2Q8IYN6 164 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 ARL14EPQ8N8R7 260 aaPredicted RBP14.12□□□□□ -0.15
VPS28-202ENST00000377348 ANKRD52Q8NB46 1076 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 ANKRD20A12PQ8NF67 263 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 SLITRK1Q96PX8 696 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 CBX8Q9HC52 389 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 EHD2Q9NZN4 543 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 GMIPQ9P107 970 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 HESX1Q9UBX0 185 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 CHORDC1Q9UHD1 332 aaPredicted RBP14.12□□□□□ -0.15
VPS28-202ENST00000377348 CNTN6Q9UQ52 1028 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 CCL26Q9Y258 94 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 FHOD1Q9Y613 1164 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 MYH10P35580 1976 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 OBSL1O75147 1896 aa14.12□□□□□ -0.15
VPS28-202ENST00000377348 TRAV19A0A0A6YYK7 116 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 FAM92AA1XBS5 289 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 SMTNL1A8MU46 457 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 LGALS16A8MUM7 142 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 DPYSL4O14531 572 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 CYP26A1O43174 497 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 PDGFBP01127 241 aaPredicted RBP14.11□□□□□ -0.15
VPS28-202ENST00000377348 AVPR1AP37288 418 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 USP8P40818 1118 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 BCAT1P54687 386 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 RAPGEF1Q13905 1077 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 FKBP15Q5T1M5 1219 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 KLHDC7AQ5VTJ3 777 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 LCLAT1Q6UWP7 414 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 LUZP1Q86V48 1076 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 TTC16Q8NEE8 873 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 RIN3Q8TB24 985 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 SHC3Q92529 594 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 USP13Q92995 863 aaPredicted RBP14.11□□□□□ -0.15
VPS28-202ENST00000377348 ASIC4Q96FT7 647 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 PNPLA8Q9NP80 782 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 KIAA1257Q9ULG3 409 aa14.11□□□□□ -0.15
VPS28-202ENST00000377348 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS28-202ENST00000377348 ZNF638Q14966 1978 aaKnown RBP14.11□□□□□ -0.15
VPS28-202ENST00000377348 DENND4CQ5VZ89 1909 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 TMEM221A6NGB7 291 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 LRRC10BA6NIK2 292 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 M0QYV0 167 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 M0R296 226 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 FOXN3O00409 490 aaPredicted RBP14.1□□□□□ -0.15
VPS28-202ENST00000377348 CKMP06732 381 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 UCHL3P15374 230 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 PSMC3P17980 439 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 HDCP19113 662 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 WEE1P30291 646 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 GDI1P31150 447 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 KIF11P52732 1056 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 UBXN1Q04323 297 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 BST2Q10589 180 aaKnown RBP14.1□□□□□ -0.15
VPS28-202ENST00000377348 SYCP1Q15431 976 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 CNGA2Q16280 664 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 PKDCCQ504Y2 493 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 MFSD6LQ8IWD5 586 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 SECISBP2LQ93073 1101 aaKnown RBP14.1□□□□□ -0.15
VPS28-202ENST00000377348 FAM81BQ96LP2 452 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 TRMT61BQ9BVS5 477 aaKnown RBP14.1□□□□□ -0.15
VPS28-202ENST00000377348 GANQ9H2C0 597 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 FBXO44Q9H4M3 255 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 COMMD8Q9NX08 183 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 FBXL21Q9UKT6 434 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 CA14Q9ULX7 337 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 PATJQ8NI35 1801 aa14.1□□□□□ -0.15
VPS28-202ENST00000377348 ANAPC1Q9H1A4 1944 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 KRBA1A5PL33 1030 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 PIK3R2O00459 728 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 XPO1O14980 1071 aaKnown RBP14.09□□□□□ -0.15
VPS28-202ENST00000377348 EPHB6O15197 1021 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 THAP12O43422 761 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 GPR37L1O60883 481 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms