RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 HEATR9A2RTY3 570 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 VWA5AO00534 786 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 IGFBP1P08833 259 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TCN1P20061 433 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TGFBR2P37173 567 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 PTSQ03393 145 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ACSM2AQ08AH3 577 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ALG10Q5BKT4 473 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TXNDC11Q6PKC3 985 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MIGA2Q7L4E1 593 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 CERKQ8TCT0 537 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 RHPN1Q8TCX5 695 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SMPDL3BQ92485 455 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 RELTQ969Z4 430 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 AK8Q96MA6 479 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 AGAP3Q96P47 875 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 LZTS2Q9BRK4 669 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ABCB10Q9NRK6 738 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 NMRK1Q9NWW6 199 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ADPRHL2Q9NX46 363 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TBC1D24Q9ULP9 559 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 DOCK10Q96BY6 2186 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SAGE2PA6NJ88 616 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 B4E1Z4 1266 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SMAPO00193 183 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 CCRL2O00421 344 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 OR10H2O60403 315 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TPPPO94811 219 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 KCNA5P22460 613 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 CDH15P55291 814 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TPTEP56180 551 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 POLR2FP61218 127 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TFAP4Q01664 338 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 STX5Q13190 355 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 INPP5AQ14642 412 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MTFR1Q15390 333 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 DGKDQ16760 1214 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SARM1Q6SZW1 724 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TMC3Q7Z5M5 1100 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SLC43A2Q8N370 569 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TTC39CQ8N584 583 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MCOLN3Q8TDD5 553 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF512BQ96KM6 892 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 HIST1H2AAQ96QV6 131 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GTPBP2Q9BX10 602 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 DPH3P1Q9H4G8 78 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 BRF2Q9HAW0 419 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF355PQ9NSJ1 428 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MTO1Q9Y2Z2 717 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 C2CD2Q9Y426 696 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GMPPBQ9Y5P6 360 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MROH7-TTC4A0A0A0MT08 1334 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MROH7Q68CQ1 1323 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SEPT4O43236 478 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 BAIAP3O94812 1187 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ALBP02768 609 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 CKBP12277 381 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 CHRM3P20309 590 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 DNAJB2P25686 324 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 RGS4P49798 205 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 COPZ1P61923 177 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TRIP10Q15642 601 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ESCO2Q56NI9 601 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ZMYM1Q5SVZ6 1142 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MCTP2Q6DN12 878 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 CYP20A1Q6UW02 462 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GPD1LQ8N335 351 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 BEST2Q8NFU1 509 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 PHF21BQ96EK2 531 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 KLHL15Q96M94 604 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TESK2Q96S53 571 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GAS2L1Q99501 681 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 C19orf44Q9H6X5 657 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TMBIM4Q9HC24 238 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ABI3Q9P2A4 366 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 RUVBL1Q9Y265 456 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 FOXN3O00409 490 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SULT1B1O43704 296 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 PGLSO95336 258 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 CPSF4O95639 269 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GIMD1P0DJR0 217 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SRCP12931 536 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 RPL9P32969 192 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 HARS2P49590 506 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 THOP1P52888 689 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ATN1P54259 1190 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 PLOD1Q02809 727 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 BST2Q10589 180 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 BNIP3Q12983 259 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SLC39A6Q13433 755 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 C1DQ13901 141 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GIT2Q14161 759 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MAPRE2Q15555 327 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 DOK6Q6PKX4 331 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ESPNLQ6ZVH7 1005 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ZC3H7AQ8IWR0 971 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 USP38Q8NB14 1042 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 RIN2Q8WYP3 895 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 HIC2Q96JB3 615 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 KATNAL1Q9BW62 490 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms