RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 MYOM2P54296 1465 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 ATMINO43313 823 aaPredicted RBP17.83■□□□□ 0.45
COL27A1-201ENST00000356083 ARMCX4Q5H9R4 360 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 CYP20A1Q6UW02 462 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 ATL2Q8NHH9 583 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 BBS4Q96RK4 519 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 PRAG1Q86YV5 1406 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 RDM1Q8NG50 284 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 PIGBQ92521 554 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 C9orf72Q96LT7 481 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 SH3GLB2Q9NR46 395 aa17.83■□□□□ 0.45
COL27A1-201ENST00000356083 CHORDC1Q9UHD1 332 aaPredicted RBP17.83■□□□□ 0.45
COL27A1-201ENST00000356083 PLA2G6O60733 806 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 RAG1P15918 1043 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 PTGER2P43116 358 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 RESP18Q5W5W9 173 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 BRSK2Q8IWQ3 736 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 FAM71DQ8N9W8 422 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 TNFSF13BQ9Y275 285 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 HIST1H2ABP04908 130 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 KCNA3P22001 575 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 FCGRTP55899 365 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 KYNUQ16719 465 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 HIST3H2AQ7L7L0 130 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 UBASH3BQ8TF42 649 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 HIST1H2ACQ93077 130 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 PSMA4P25789 261 aaKnown RBP17.83■□□□□ 0.44
COL27A1-201ENST00000356083 HNMTP50135 292 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 ZNF57Q68EA5 555 aaPredicted RBP17.83■□□□□ 0.44
COL27A1-201ENST00000356083 TRPM5Q9NZQ8 1165 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 AXIN2Q9Y2T1 843 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 SNRNP27Q8WVK2 155 aaKnown RBP17.83■□□□□ 0.44
COL27A1-201ENST00000356083 NEDD4P46934 1319 aa17.83■□□□□ 0.44
COL27A1-201ENST00000356083 MOXD2PA6NHM9 499 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 CBX4O00257 560 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 C1DQ13901 141 aaKnown RBP17.82■□□□□ 0.44
COL27A1-201ENST00000356083 SNAP47Q5SQN1 464 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 TAF8Q7Z7C8 310 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 CPB2Q96IY4 423 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 STAG3L1P0CL83 205 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 PDK1Q15118 436 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 LGALS16A8MUM7 142 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 TCEA3O75764 348 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 PPP2R1BP30154 601 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 EPHB3P54753 998 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 AGAP9Q5VTM2 703 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 PACS1Q6VY07 963 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 PACSIN1Q9BY11 444 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 PEG3Q9GZU2 1588 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 ERI2A8K979 691 aaKnown RBP17.82■□□□□ 0.44
COL27A1-201ENST00000356083 H3BN98 237 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 NR5A2O00482 541 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 DNALI1O14645 258 aaPredicted RBP17.82■□□□□ 0.44
COL27A1-201ENST00000356083 AP1G2O75843 785 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 FGRP09769 529 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 PEX5P50542 639 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 SCARF1Q14162 830 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 SEZ6Q53EL9 994 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 FNDC3BQ53EP0 1204 aaKnown RBP17.82■□□□□ 0.44
COL27A1-201ENST00000356083 FAM20CQ8IXL6 584 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 COLGALT2Q8IYK4 626 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 SEC16BQ96JE7 1060 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 RBM15Q96T37 977 aaKnown RBP eCLIP17.82■□□□□ 0.445e-7■□□□□ 8.9
COL27A1-201ENST00000356083 FAM135BQ49AJ0 1406 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 MYO5CQ9NQX4 1742 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 ATAD3BQ5T9A4 648 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 C12orf60Q5U649 245 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 CCSAPQ6IQ19 270 aaPredicted RBP17.82■□□□□ 0.44
COL27A1-201ENST00000356083 USP13Q92995 863 aaPredicted RBP17.82■□□□□ 0.44
COL27A1-201ENST00000356083 NLNQ9BYT8 704 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 PSMD14O00487 310 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 MSH3P20585 1137 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 HSD3B2P26439 372 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 PFKFB3Q16875 520 aaPredicted RBP17.82■□□□□ 0.44
COL27A1-201ENST00000356083 CYB5R4Q7L1T6 521 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 WDR62O43379 1518 aa17.82■□□□□ 0.44
COL27A1-201ENST00000356083 CASTOR2A6NHX0 329 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 PTPN1P18031 435 aaKnown RBP17.81■□□□□ 0.44
COL27A1-201ENST00000356083 EFEMP1Q12805 493 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 CYLC2Q14093 348 aaPredicted RBP17.81■□□□□ 0.44
COL27A1-201ENST00000356083 SEMA4DQ92854 862 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 TBCDQ9BTW9 1192 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 LYVE1Q9Y5Y7 322 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 SCAIQ8N9R8 606 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 EVA1BQ9NVM1 165 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 GTF2H1P32780 548 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 ACOX2Q99424 681 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 IARS2Q9NSE4 1012 aaKnown RBP17.81■□□□□ 0.44
COL27A1-201ENST00000356083 RHBDL2Q9NX52 303 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 TRIM16LQ309B1 348 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 WLSQ5T9L3 541 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 OXER1Q8TDS5 423 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 UBP1Q9NZI7 540 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 PCDHB9Q9Y5E1 797 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 NUP160Q12769 1436 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 SAC3D1A6NKF1 404 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 HNRNPH2P55795 449 aaKnown RBP17.81■□□□□ 0.44
COL27A1-201ENST00000356083 GPAT2Q6NUI2 795 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 OMDQ99983 421 aa17.81■□□□□ 0.44
COL27A1-201ENST00000356083 THG1LQ9NWX6 298 aaKnown RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms