RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 KCNA2P16389 499 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 GTF2BQ00403 316 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 PTRHD1Q6GMV3 140 aaKnown RBP15.48■□□□□ 0.07
COL17A1-201ENST00000353479 PRMT1Q99873 361 aaKnown RBP15.48■□□□□ 0.07
COL17A1-201ENST00000353479 TLR8Q9NR97 1041 aaKnown RBP15.48■□□□□ 0.07
COL17A1-201ENST00000353479 ZNF197O14709 1029 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 GJB1P08034 283 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 SNHG28P0DPA3 235 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 SPRP35270 261 aaPredicted RBP15.48■□□□□ 0.07
COL17A1-201ENST00000353479 FDFT1P37268 417 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 MAPK7Q13164 816 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 DNAJC19Q96DA6 116 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 SMARCD1Q96GM5 515 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 LRRC37BQ96QE4 947 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 PKP3Q9Y446 797 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 A0A0A6YYK5 440 aaPredicted RBP15.48■□□□□ 0.07
COL17A1-201ENST00000353479 PPFIA2O75334 1257 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 FLT3LGP49771 235 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 PPP3CAQ08209 521 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 LINC00523Q86TU6 105 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 BLOC1S5Q8TDH9 187 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 STAMBPL1Q96FJ0 436 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 SMYD3Q9H7B4 428 aa15.48■□□□□ 0.07
COL17A1-201ENST00000353479 EML4Q9HC35 981 aaKnown RBP15.48■□□□□ 0.07
COL17A1-201ENST00000353479 TMEM247A6NEH6 219 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 WNT7AO00755 349 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 SPAG6O75602 509 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 SPATA31C1P0DKV0 1188 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 CCDC130P13994 396 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 POLD3Q15054 466 aaPredicted RBP15.47■□□□□ 0.07
COL17A1-201ENST00000353479 MFN1Q8IWA4 741 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 RAB42Q8N4Z0 105 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 GIPC2Q8TF65 315 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 RIN2Q8WYP3 895 aaPredicted RBP15.47■□□□□ 0.07
COL17A1-201ENST00000353479 SMG5Q9UPR3 1016 aaKnown RBP15.47■□□□□ 0.07
COL17A1-201ENST00000353479 KLRC2P26717 231 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 OXCT1P55809 520 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 LRIG3Q6UXM1 1119 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 ANKRD23Q86SG2 305 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 SCUBE3Q8IX30 993 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 HSD17B14Q9BPX1 270 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 SNCAIPQ9Y6H5 919 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 ABCC6O95255 1503 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 ADRB2P07550 413 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 SLC39A12Q504Y0 691 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 SPATA17Q96L03 361 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 FOPNLQ96NB1 174 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 TNFSF13BQ9Y275 285 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 GEMP55040 296 aa15.47■□□□□ 0.07
COL17A1-201ENST00000353479 PRPF4O43172 522 aaKnown RBP eCLIP15.46■□□□□ 0.07
COL17A1-201ENST00000353479 MYO1DO94832 1006 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 IKBKEQ14164 716 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 CAPRIN1Q14444 709 aaKnown RBP15.46■□□□□ 0.07
COL17A1-201ENST00000353479 GBP5Q96PP8 586 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 CASS4Q9NQ75 786 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 ASTN1O14525 1302 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 UMODL1Q5DID0 1318 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 KLRC4O43908 158 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 FAM110CQ1W6H9 321 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 ITIH5Q86UX2 942 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 MTMR14Q8NCE2 650 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 EXD1Q8NHP7 514 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 XAB2Q9HCS7 855 aaKnown RBP15.46■□□□□ 0.07
COL17A1-201ENST00000353479 NSMCE4AQ9NXX6 385 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 VPS28Q9UK41 221 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 TCP11X1B4DZS4 312 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 STX7O15400 261 aaKnown RBP15.46■□□□□ 0.07
COL17A1-201ENST00000353479 FARP2O94887 1054 aaPredicted RBP15.46■□□□□ 0.07
COL17A1-201ENST00000353479 NFICP08651 508 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 RALBP11234 206 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 ANO5Q75V66 913 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 TMEM121Q9BTD3 319 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 FRMD8P1Q9BZ68 369 aaPredicted RBP15.46■□□□□ 0.07
COL17A1-201ENST00000353479 ECM1Q16610 540 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 HS6ST3Q8IZP7 471 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 ARL8AQ96BM9 186 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 SENP8Q96LD8 212 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 FBXO44Q9H4M3 255 aa15.46■□□□□ 0.07
COL17A1-201ENST00000353479 RHOCP08134 193 aa15.46■□□□□ 0.06
COL17A1-201ENST00000353479 PAEPP09466 180 aa15.46■□□□□ 0.06
COL17A1-201ENST00000353479 CHN1P15882 459 aa15.46■□□□□ 0.06
COL17A1-201ENST00000353479 CCL23P55773 120 aa15.46■□□□□ 0.06
COL17A1-201ENST00000353479 E2F5Q15329 346 aa15.46■□□□□ 0.06
COL17A1-201ENST00000353479 DMAP1Q9NPF5 467 aaPredicted RBP15.46■□□□□ 0.06
COL17A1-201ENST00000353479 CHD2O14647 1828 aaKnown RBP15.45■□□□□ 0.06
COL17A1-201ENST00000353479 SNRPAP09012 282 aaKnown RBP15.45■□□□□ 0.06
COL17A1-201ENST00000353479 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.45■□□□□ 0.06
COL17A1-201ENST00000353479 TIGD7Q6NT04 549 aaPredicted RBP15.45■□□□□ 0.06
COL17A1-201ENST00000353479 LBX2Q6XYB7 198 aa15.45■□□□□ 0.06
COL17A1-201ENST00000353479 ZNF467Q7Z7K2 595 aaPredicted RBP15.45■□□□□ 0.06
COL17A1-201ENST00000353479 CHST12Q9NRB3 414 aa15.45■□□□□ 0.06
COL17A1-201ENST00000353479 TTC36A6NLP5 189 aa15.45■□□□□ 0.06
COL17A1-201ENST00000353479 CHRM3P20309 590 aa15.45■□□□□ 0.06
COL17A1-201ENST00000353479 WEE1P30291 646 aa15.45■□□□□ 0.06
COL17A1-201ENST00000353479 TNFSF9P41273 254 aa15.45■□□□□ 0.06
COL17A1-201ENST00000353479 SLC29A2Q14542 456 aa15.45■□□□□ 0.06
COL17A1-201ENST00000353479 EFTUD2Q15029 972 aaKnown RBP eCLIP15.45■□□□□ 0.06
COL17A1-201ENST00000353479 CASKIN2Q8WXE0 1202 aa15.45■□□□□ 0.06
COL17A1-201ENST00000353479 ACO2Q99798 780 aaKnown RBP15.45■□□□□ 0.06
COL17A1-201ENST00000353479 TRIM15Q9C019 465 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms