RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PAXIP1Q6ZW49 1069 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 CYP4V2Q6ZWL3 525 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 VTA1Q9NP79 307 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 XPO7Q9UIA9 1087 aaKnown RBP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 SMG5Q9UPR3 1016 aaKnown RBP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 A0A1B0GUA9 196 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 A0A1W2PPM1 405 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 H3BRB1 525 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 RPA3P35244 121 aaPredicted RBP22.78■■□□□ 1.24
SHMT1-202ENST00000352886 GTF2A1P52655 376 aaPredicted RBP22.78■■□□□ 1.24
SHMT1-202ENST00000352886 SNAPC2Q13487 334 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 RASA2Q15283 850 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 C3orf62Q6ZUJ4 267 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 ZC3H18Q86VM9 953 aaKnown RBP22.78■■□□□ 1.24
SHMT1-202ENST00000352886 FBXO36Q8NEA4 188 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 TUT1Q9H6E5 874 aaKnown RBP22.78■■□□□ 1.24
SHMT1-202ENST00000352886 E7ESA3 106 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 PIAS1O75925 651 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 CA4P22748 312 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 SPARCL1Q14515 664 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 CCDC63Q8NA47 563 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 GPRC5AQ8NFJ5 357 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 PLCD4Q9BRC7 762 aa22.78■■□□□ 1.24
SHMT1-202ENST00000352886 ENDOD1O94919 500 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 STAU1O95793 577 aaKnown RBP22.77■■□□□ 1.24
SHMT1-202ENST00000352886 PFKMP08237 780 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 RGS7P49802 495 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 SLC18A1P54219 525 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 DPYSL3Q14195 570 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 RMDN2Q96LZ7 410 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 PNMA3Q9UL41 463 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 ZMYND8Q9ULU4 1186 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-202ENST00000352886 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-202ENST00000352886 PRPSAP2O60256 369 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 ROR1Q01973 937 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 NOMO1Q15155 1222 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 GOLGA7BQ2TAP0 167 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 BBS9Q3SYG4 887 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 GALNTL6Q49A17 601 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 DARS2Q6PI48 645 aaKnown RBP22.77■■□□□ 1.24
SHMT1-202ENST00000352886 PDIK1LQ8N165 341 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 FBF1Q8TES7 1133 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 GRAMD1AQ96CP6 724 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 KLHL14Q9P2G3 628 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 KIAA1257Q9ULG3 409 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 GRID1Q9ULK0 1009 aa22.77■■□□□ 1.24
SHMT1-202ENST00000352886 ATP11AP98196 1134 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 DNAJC3Q13217 504 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 PALM2Q8IXS6 379 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 FITM2Q8N6M3 262 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 GBP7Q8N8V2 638 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-202ENST00000352886 SPOCK2Q92563 424 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 EMID1Q96A84 441 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-202ENST00000352886 MIS12Q9H081 205 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 CXCL16Q9H2A7 254 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-202ENST00000352886 KRT4P19013 534 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 CCNA1P78396 465 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 ELF3P78545 371 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-202ENST00000352886 GRIK4Q16099 956 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 SNCBQ16143 134 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 NT5DC4Q86YG4 428 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 TTC39CQ8N584 583 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 PAFAH2Q99487 392 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 ACSS3Q9H6R3 686 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 GBA2Q9HCG7 927 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-202ENST00000352886 CD248Q9HCU0 757 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 FETUBQ9UGM5 382 aa22.76■■□□□ 1.23
SHMT1-202ENST00000352886 SMAPO00193 183 aa22.75■■□□□ 1.23
SHMT1-202ENST00000352886 TYROBPO43914 113 aa22.75■■□□□ 1.23
SHMT1-202ENST00000352886 MGAT5Q09328 741 aa22.75■■□□□ 1.23
SHMT1-202ENST00000352886 MARCH8Q5T0T0 291 aa22.75■■□□□ 1.23
SHMT1-202ENST00000352886 PPP1R26Q5T8A7 1209 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-202ENST00000352886 TBC1D1Q86TI0 1168 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-202ENST00000352886 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-202ENST00000352886 RXFP1Q9HBX9 757 aa22.75■■□□□ 1.23
SHMT1-202ENST00000352886 RBM47A0AV96 593 aaKnown RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 STIP1P31948 543 aaKnown RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 GRM5P41594 1212 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 RNASELQ05823 741 aaKnown RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 TFDP2Q14188 446 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 SLC1A5Q15758 541 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 KLHL38Q2WGJ6 581 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 CCDC14Q49A88 953 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 PMF1Q6P1K2 205 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 SCYL2Q6P3W7 929 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 C1orf228Q6PIY5 440 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 KATNBL1Q9H079 304 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 FAM124BQ9H5Z6 455 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 ECT2Q9H8V3 914 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 GEMIN8Q9NWZ8 242 aaKnown RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 GINS2Q9Y248 185 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 HGSO14964 777 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 MGRN1O60291 552 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 NCALDP61601 193 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 BNIP1Q12981 228 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 KRT81Q14533 505 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 FAM47CQ5HY64 1035 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 FAM182AQ5T1J6 154 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 SYCP2LQ5T4T6 812 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms