RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SEPT9Q9UHD8 586 aaPredicted RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 INHBAP08476 426 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 ANPEPP15144 967 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 PCGF5Q86SE9 256 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 PRPF39Q86UA1 669 aaKnown RBP23.36■■□□□ 1.33
TRIM28-202ENST00000341753 C3orf70A6NLC5 250 aaPredicted RBP23.36■■□□□ 1.33
TRIM28-202ENST00000341753 MEI4A8MW99 385 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 LYNP07948 512 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 HMGCS2P54868 508 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 PRKG1Q13976 671 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 LRRC36Q1X8D7 754 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 NIPA1Q7RTP0 329 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 CTAGE3PQ8IX95 158 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 DDX51Q8N8A6 666 aaKnown RBP eCLIP23.36■■□□□ 1.333e-6■■■■■ 42.5
TRIM28-202ENST00000341753 CFAP36Q96G28 342 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 PCSK1NQ9UHG2 260 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 STRIP2Q9ULQ0 834 aa23.36■■□□□ 1.33
TRIM28-202ENST00000341753 CYB561D2O14569 222 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 GSTA2P09210 222 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 JAK3P52333 1124 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 ALDH18A1P54886 795 aaKnown RBP23.35■■□□□ 1.33
TRIM28-202ENST00000341753 IQANK1A0A1B0GTG1 560 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 DCAF8L1A6NGE4 600 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 ZNF200P98182 395 aaPredicted RBP23.35■■□□□ 1.33
TRIM28-202ENST00000341753 TAF5Q15542 800 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 SWSAP1Q6NVH7 229 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 CHSY1Q86X52 802 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 SCUBE1Q8IWY4 988 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 ZFAND2BQ8WV99 257 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 ACAP3Q96P50 834 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 TRAPPC9Q96Q05 1148 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 SRPK1Q96SB4 655 aaKnown RBP23.35■■□□□ 1.33
TRIM28-202ENST00000341753 SLC13A1Q9BZW2 595 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 PHACTR1Q9C0D0 580 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 IQCGQ9H095 443 aaKnown RBP23.35■■□□□ 1.33
TRIM28-202ENST00000341753 MMADHCQ9H3L0 296 aaPredicted RBP23.35■■□□□ 1.33
TRIM28-202ENST00000341753 PPM1HQ9ULR3 514 aa23.35■■□□□ 1.33
TRIM28-202ENST00000341753 PSMA2P25787 234 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 LRRC38Q5VT99 294 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 SNRNP48Q6IEG0 339 aaKnown RBP23.34■■□□□ 1.33
TRIM28-202ENST00000341753 GPAT2Q6NUI2 795 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 FETUBQ9UGM5 382 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 TCRBV5S1A1TA0A578 114 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 TRIM49D1C9J1S8 452 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 TGDSO95455 350 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 ITGBL1O95965 494 aaPredicted RBP23.34■■□□□ 1.33
TRIM28-202ENST00000341753 RFC1P35251 1148 aaPredicted RBP23.34■■□□□ 1.33
TRIM28-202ENST00000341753 TMPRSS15P98073 1019 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 BST1Q10588 318 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 ZC3H12AQ5D1E8 599 aaKnown RBP23.34■■□□□ 1.33
TRIM28-202ENST00000341753 ARFGAP1Q8N6T3 406 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 EMC1Q8N766 993 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 PPM1NQ8N819 430 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 JOSD2Q8TAC2 188 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 TMEM143Q96AN5 459 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 ANGPTL2Q9UKU9 493 aa23.34■■□□□ 1.33
TRIM28-202ENST00000341753 E7ESA3 106 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 COPEO14579 308 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 RNF8O76064 485 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 CST3P01034 146 aaPredicted RBP23.33■■□□□ 1.33
TRIM28-202ENST00000341753 NCOA4Q13772 614 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 DALRD3Q5D0E6 543 aaKnown RBP23.33■■□□□ 1.33
TRIM28-202ENST00000341753 RASIP1Q5U651 963 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 SCARA5Q6ZMJ2 495 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 ULK2Q8IYT8 1036 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 SMC1BQ8NDV3 1235 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 WRNIP1Q96S55 665 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 CNTN3Q9P232 1028 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 NR3C2P08235 984 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 ETS2P15036 469 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 GSTT1P30711 240 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 CLDN10P78369 228 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 BMPR2Q13873 1038 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 MTERF2Q49AM1 385 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 C1orf146Q5VVC0 180 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 NPNTQ6UXI9 565 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 DLK2Q6UY11 383 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 SH2D5Q6ZV89 423 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 RFX6Q8HWS3 928 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 KIAA0319LQ8IZA0 1049 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 ARHGAP24Q8N264 748 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 WDTC1Q8N5D0 677 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 DDX56Q9NY93 547 aaKnown RBP23.33■■□□□ 1.33
TRIM28-202ENST00000341753 SLC7A8Q9UHI5 535 aa23.33■■□□□ 1.33
TRIM28-202ENST00000341753 A8MXQ7 604 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 RGS20O76081 388 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 CALB1P05937 261 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 RAP1GDS1P52306 607 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 KRT76Q01546 638 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 UBAP2LQ14157 1087 aaKnown RBP23.32■■□□□ 1.32
TRIM28-202ENST00000341753 TMPRSS6Q8IU80 811 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 SLC44A1Q8WWI5 657 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 SLC9A2Q9UBY0 812 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 PCDHA10Q9Y5I2 948 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 CAPN14A8MX76 684 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 AQP5P55064 265 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 EIF3EP60228 445 aaKnown RBP23.32■■□□□ 1.32
TRIM28-202ENST00000341753 DSG1Q02413 1049 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 PIGHQ14442 188 aaPredicted RBP23.32■■□□□ 1.32
TRIM28-202ENST00000341753 ECSITQ9BQ95 431 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms