RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 HSPH1Q92598 858 aa17.1■□□□□ 0.33
LITAF-201ENST00000339430 NKD2Q969F2 451 aaPredicted RBP17.1■□□□□ 0.33
LITAF-201ENST00000339430 FOXP3Q9BZS1 431 aa17.1■□□□□ 0.33
LITAF-201ENST00000339430 NRCAMQ92823 1304 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 DNAJC8O75937 253 aaPredicted RBP17.09■□□□□ 0.33
LITAF-201ENST00000339430 UBOX5O94941 541 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 VTNP04004 478 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 STAG3L1P0CL83 205 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 XRCC4Q13426 336 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 PKN2Q16513 984 aaKnown RBP17.09■□□□□ 0.33
LITAF-201ENST00000339430 ANKRD22Q5VYY1 191 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 C4orf33Q8N1A6 199 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 SLC4A11Q8NBS3 891 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 SLC35B2Q8TB61 432 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 PRCCQ92733 491 aaPredicted RBP17.09■□□□□ 0.33
LITAF-201ENST00000339430 ELOVL4Q9GZR5 314 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 SPC25Q9HBM1 224 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 PCDH9Q9HC56 1237 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 XPNPEP3Q9NQH7 507 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 SLC12A4Q9UP95 1085 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 A0A087WZ62 844 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 RRN3P2A6NIE6 340 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 HAS3O00219 553 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 KRT15P19012 456 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 KDELR1P24390 212 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 FOXN2P32314 431 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 CTCFP49711 727 aaPredicted RBP17.09■□□□□ 0.33
LITAF-201ENST00000339430 GTF2A1P52655 376 aaPredicted RBP17.09■□□□□ 0.33
LITAF-201ENST00000339430 NRLP54845 237 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 CEP128Q6ZU80 1094 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 FAM47EQ6ZV65 393 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 SPATA21Q7Z572 469 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 UBA3Q8TBC4 463 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 TTC25Q96NG3 672 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 FDXACB1Q9BRP7 624 aaPredicted RBP17.09■□□□□ 0.33
LITAF-201ENST00000339430 BEGAINQ9BUH8 593 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 BCO2Q9BYV7 579 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 UPF3AQ9H1J1 476 aaKnown RBP17.09■□□□□ 0.33
LITAF-201ENST00000339430 LHX5Q9H2C1 402 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 AGAP1Q9UPQ3 857 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 TNFSF13BQ9Y275 285 aa17.09■□□□□ 0.33
LITAF-201ENST00000339430 FAM47DPA6NHR8 397 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 M0QYV0 167 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 MICAL2O94851 1124 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 SUN1O94901 812 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 WDR4P57081 412 aaKnown RBP17.08■□□□□ 0.33
LITAF-201ENST00000339430 PTPN11Q06124 597 aaPredicted RBP17.08■□□□□ 0.33
LITAF-201ENST00000339430 HIC1Q14526 733 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 HADHQ16836 314 aaKnown RBP17.08■□□□□ 0.33
LITAF-201ENST00000339430 MAP3K21Q5TCX8 1036 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 CGB2Q6NT52 195 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 CXCL17Q6UXB2 119 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 CENPUQ71F23 418 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 POLNQ7Z5Q5 900 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 TRABD2AQ86V40 505 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 RFX6Q8HWS3 928 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 PARP9Q8IXQ6 854 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 PXYLP1Q8TE99 480 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 THOC1Q96FV9 657 aaKnown RBP17.08■□□□□ 0.33
LITAF-201ENST00000339430 SGSM3Q96HU1 749 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 MAGEB18Q96M61 343 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 KATNAL1Q9BW62 490 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 IFT122Q9HBG6 1241 aa17.08■□□□□ 0.33
LITAF-201ENST00000339430 IL18RAPO95256 599 aa17.08■□□□□ 0.32
LITAF-201ENST00000339430 KRT7P08729 469 aa17.08■□□□□ 0.32
LITAF-201ENST00000339430 ARHGEF6Q15052 776 aa17.08■□□□□ 0.32
LITAF-201ENST00000339430 KCTD6Q8NC69 237 aa17.08■□□□□ 0.32
LITAF-201ENST00000339430 CALN1Q9BXU9 219 aa17.08■□□□□ 0.32
LITAF-201ENST00000339430 TRABDQ9H4I3 376 aa17.08■□□□□ 0.32
LITAF-201ENST00000339430 BRCA2P51587 3418 aa17.08■□□□□ 0.32
LITAF-201ENST00000339430 ADAMTS4O75173 837 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 TAC1P20366 129 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 MIPP30301 263 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 SSTR1P30872 391 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 EFTUD2Q15029 972 aaKnown RBP eCLIP17.07■□□□□ 0.32
LITAF-201ENST00000339430 HIF1AQ16665 826 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 MSS51Q4VC12 460 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 RAB6CQ53S08 254 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 FNBP1LQ5T0N5 605 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 SH3PXD2AQ5TCZ1 1133 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 TBC1D1Q86TI0 1168 aaPredicted RBP17.07■□□□□ 0.32
LITAF-201ENST00000339430 UNC45BQ8IWX7 931 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 RIBC1Q8N443 379 aaPredicted RBP17.07■□□□□ 0.32
LITAF-201ENST00000339430 RSAD2Q8WXG1 361 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 RAB6CQ9H0N0 254 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 FAM49AQ9H0Q0 323 aaPredicted RBP17.07■□□□□ 0.32
LITAF-201ENST00000339430 SHOC2Q9UQ13 582 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 TCRBV7S3A2A0A539 114 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 ALOX15BO15296 676 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 GPX6P59796 221 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 MYO1EQ12965 1108 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 SYCP2LQ5T4T6 812 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 PPP1R21Q6ZMI0 780 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 C7orf31Q8N865 590 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 CCDC63Q8NA47 563 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 CPT1BQ92523 772 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 SPOCK2Q92563 424 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 TMEM176AQ96HP8 235 aa17.07■□□□□ 0.32
LITAF-201ENST00000339430 HEXIM2Q96MH2 286 aaKnown RBP17.07■□□□□ 0.32
LITAF-201ENST00000339430 FARP1Q9Y4F1 1045 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms