RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NET1Q7Z628 596 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 SEPT1Q8WYJ6 367 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 EXT2Q93063 718 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 ZDHHC15Q96MV8 337 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 CPNE1Q99829 537 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 UNC45AQ9H3U1 944 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 USP18Q9UMW8 372 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 KRT20P35900 424 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 NSUN2Q08J23 767 aaKnown RBP eCLIP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 TAF2Q6P1X5 1199 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 C4orf19Q8IY42 314 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM71DQ8N9W8 422 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 KIAA0895Q8NCT3 520 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 WRNIP1Q96S55 665 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 NRDE2Q9H7Z3 1164 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 RNPEPL1Q9HAU8 725 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 POLE3Q9NRF9 147 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 COPG2Q9UBF2 871 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 DMGDHQ9UI17 866 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 CFAP99D6REC4 459 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 GOLGA8RI6L899 631 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 SHOX2O60902 331 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 LRRC8DQ7L1W4 858 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF571Q7Z3V5 609 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 FUKQ8N0W3 1084 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF280CQ8ND82 737 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 ASCC2Q9H1I8 757 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 ETFBP38117 255 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 NUDT2P50583 147 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 RAVER2Q9HCJ3 691 aaKnown RBP10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 ITGA11Q9UKX5 1188 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 UBOX5O94941 541 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 HIST1H2AGP0C0S8 130 aaPredicted RBP10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 HIST1H2ADP20671 130 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 FKBP1AP62942 108 aaKnown RBP10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 ILDR1Q86SU0 546 aaPredicted RBP10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 KIAA2013Q8IYS2 634 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 TAGAPQ8N103 731 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 TATDN2Q93075 761 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 HIST1H2AHQ96KK5 128 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 HIST1H2AJQ99878 128 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 H2AFJQ9BTM1 129 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 MEGF6O75095 1541 aa10.65□□□□□ -0.71
CCDC88A-202ENST00000336838 TOPAZ1Q8N9V7 1692 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 SMIM31A0A1B0GVY4 71 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 OGTO15294 1046 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 MAD2L1Q13257 205 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 XRCC4Q13426 336 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 RUSC1Q9BVN2 902 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 AIM2O14862 343 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 CHADO15335 359 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 BIRC5O15392 142 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC37A4O43826 429 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 VDRP11473 427 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 NME3Q13232 169 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 GRTP1Q5TC63 336 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 AGBL3Q8NEM8 1001 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 SPATA20Q8TB22 786 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 OXNAD1Q96HP4 312 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 FAM111AQ96PZ2 611 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 VAT1Q99536 393 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 WDR47O94967 919 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 CRABP2P29373 138 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 SESN2P58004 480 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 R3HDM1Q15032 1099 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC9A9Q8IVB4 645 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF333Q96JL9 665 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 UTP6Q9NYH9 597 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 KPNA1P52294 538 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 LAMC2Q13753 1193 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 PKN1Q16512 942 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 TTLL9Q3SXZ7 439 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 NEUROG2Q9H2A3 272 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 RMND5AQ9H871 391 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 MAPRE3Q9UPY8 281 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 RBAK-RBAKDNI3L0D1 243 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 AHCYL1O43865 530 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 MSLNQ13421 630 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 ANKS3Q6ZW76 656 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 TSPAN18Q96SJ8 248 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 TNS2Q63HR2 1409 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 MFSD5Q6N075 450 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 FBXO36Q8NEA4 188 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 OSCP1Q8WVF1 389 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 CORO1CQ9ULV4 474 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 G3BP2Q9UN86 482 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 PNMA8CA0A1B0GUJ8 204 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 C5orf58C9J3I9 102 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 CLK1P49759 484 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 RAP1GDS1P52306 607 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 ST3GAL1Q11201 340 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 PARP6Q2NL67 630 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 SPANXN3Q5MJ09 141 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 ABRAQ8N0Z2 381 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 WNK4Q96J92 1243 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 ELMO2Q96JJ3 720 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 TMEM120AQ9BXJ8 343 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms