RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 RRM2BQ7LG56 351 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 PRPF39Q86UA1 669 aaKnown RBP10.55□□□□□ -0.72
CHD3-201ENST00000330494 WDR48Q8TAF3 677 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 DDI1Q8WTU0 396 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 FAM111AQ96PZ2 611 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 NMRK2Q9NPI5 230 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 IARS2Q9NSE4 1012 aaKnown RBP10.55□□□□□ -0.72
CHD3-201ENST00000330494 RPS6KL1Q9Y6S9 549 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 ARHGEF9O43307 516 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SNRPAP09012 282 aaKnown RBP10.55□□□□□ -0.72
CHD3-201ENST00000330494 TKTL1P51854 596 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 ADIGQ0VDE8 80 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 TLK2Q86UE8 772 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 C4orf19Q8IY42 314 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SEC16BQ96JE7 1060 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 C17orf80Q9BSJ5 609 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 NUDT5Q9UKK9 219 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 ARHGAP26Q9UNA1 814 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 CDYLQ9Y232 598 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 TRIM49D1C9J1S8 452 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 MICAL2O94851 1124 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 ARL4DP49703 201 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SCUBE3Q8IX30 993 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 ATP8B4Q8TF62 1192 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 ISCUQ9H1K1 167 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 NT5MQ9NPB1 228 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 FAM198AQ9UFP1 575 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 ARL2BPQ9Y2Y0 163 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 A8MX80 341 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SCAMP3O14828 347 aaKnown RBP10.55□□□□□ -0.72
CHD3-201ENST00000330494 ITGB6P18564 788 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 PLA2G4AP47712 749 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 RARRES1P49788 294 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 MFSD10Q14728 455 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SDE2Q6IQ49 451 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SRLQ86TD4 932 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 NAF1Q96HR8 494 aaKnown RBP10.55□□□□□ -0.72
CHD3-201ENST00000330494 PNMA5Q96PV4 448 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SMPD4Q9NXE4 827 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 LACTBL1A8MY62 500 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SKAP2O75563 359 aaPredicted RBP10.55□□□□□ -0.72
CHD3-201ENST00000330494 PTGISQ16647 500 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 CLEC16AQ2KHT3 1053 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 OLFML2BQ68BL8 750 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 KCNK18Q7Z418 384 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 FAM83AQ86UY5 434 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 GALNT4Q8N4A0 578 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 FBXO36Q8NEA4 188 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 SYN2Q92777 582 aaPredicted RBP10.55□□□□□ -0.72
CHD3-201ENST00000330494 ERP27Q96DN0 273 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 STAMBPL1Q96FJ0 436 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 BRD8Q9H0E9 1235 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 CHST12Q9NRB3 414 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 ARHGAP20Q9P2F6 1191 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 DYTNA2CJ06 578 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 SLC12A3P55017 1021 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 CENPCQ03188 943 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 PPATQ06203 517 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 DDX39BQ13838 428 aaKnown RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 IL17RAQ96F46 866 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 LACRTQ9GZZ8 138 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 BCAT1P54687 386 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 GEMIN4P57678 1058 aaKnown RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 CCDC85BQ15834 202 aaPredicted RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 ILDR1Q86SU0 546 aaPredicted RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 KIAA1683Q9H0B3 1180 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 ADNPQ9H2P0 1102 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 DDX28Q9NUL7 540 aaKnown RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 PLAGL2Q9UPG8 496 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 SMG5Q9UPR3 1016 aaKnown RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 AGRPO00253 132 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 AKAP10O43572 662 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 HLA-DPA1P20036 260 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 LSP1P33241 339 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 WDR49Q8IV35 697 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 FHDC1Q9C0D6 1143 aaPredicted RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 MANSC1Q9H8J5 431 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 STX18Q9P2W9 335 aaKnown RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 CBX4O00257 560 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 GARTP22102 1010 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 ERVK-9P63128 1117 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 SLC30A9Q6PML9 568 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 MIER2Q8N344 545 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 DNAJC7Q99615 494 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 AP4E1Q9UPM8 1137 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 USP15Q9Y4E8 981 aaPredicted RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 SNX5Q9Y5X3 404 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 PSTPIP1O43586 416 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 RALBP11234 206 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 ZC3H12BQ5HYM0 836 aaKnown RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 RABGAP1LQ5R372 815 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 DNERQ8NFT8 737 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 XPO6Q96QU8 1125 aaKnown RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 LRRC4BQ9NT99 713 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 TMEM161AQ9NX61 479 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 GTF3C4Q9UKN8 822 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 ALDH2P05091 517 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 SERPINB9P50453 376 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 DACH2Q96NX9 599 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms