RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TTLL4Q14679 1199 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 C11orf63Q6NUN7 778 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 CAMK1DQ8IU85 385 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 ANKRD49Q8WVL7 239 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 GREM2Q9H772 168 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 SH3GLB1Q9Y371 365 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 KDM6AO15550 1401 aaPredicted RBP14.75□□□□□ -0.05
COL7A1-201ENST00000328333 MYO5BQ9ULV0 1848 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 UNC13BO14795 1591 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 UBE2QL1A1L167 161 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 EFCAB10A6NFE3 127 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 IREB2P48200 963 aaKnown RBP14.75□□□□□ -0.05
COL7A1-201ENST00000328333 FOXD4Q12950 439 aaPredicted RBP14.75□□□□□ -0.05
COL7A1-201ENST00000328333 CHMP1BQ7LBR1 199 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 RDM1Q8NG50 284 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 F8W810 466 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 TBX3O15119 743 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 RPS6KA5O75582 802 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 IL12AP29459 219 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 NFIAQ12857 509 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 VEPH1Q14D04 833 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 BOLA3Q53S33 107 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 SNX30Q5VWJ9 437 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 ZNF746Q6NUN9 644 aaPredicted RBP14.75□□□□□ -0.05
COL7A1-201ENST00000328333 USP17L2Q6R6M4 530 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 TSEN34Q9BSV6 310 aaKnown RBP14.75□□□□□ -0.05
COL7A1-201ENST00000328333 TMBIM4Q9HC24 238 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 DRG1Q9Y295 367 aaKnown RBP14.75□□□□□ -0.05
COL7A1-201ENST00000328333 AAR2Q9Y312 384 aaKnown RBP14.75□□□□□ -0.05
COL7A1-201ENST00000328333 ZNF185O15231 689 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 A1BGP04217 495 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 TRAF2Q12933 501 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 SRPK1Q96SB4 655 aaKnown RBP14.75□□□□□ -0.05
COL7A1-201ENST00000328333 GANQ9H2C0 597 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 TMEM8AQ9HCN3 771 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 HAO1Q9UJM8 370 aa14.75□□□□□ -0.05
COL7A1-201ENST00000328333 DGAT1O75907 488 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 GYPCP04921 128 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 CDH3P22223 829 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 CHN2P52757 468 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 OSTNP61366 133 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 TPCN2Q8NHX9 752 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 GPR101Q96P66 508 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 RRN3Q9NYV6 651 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 FAM92AA1XBS5 289 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PPEF1O14829 653 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 ATP6V1B2P21281 511 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 SLC16A1P53985 500 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 Q4G0T1 1027 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 OLFML1Q6UWY5 402 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 MYL12BO14950 172 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PABPC1P11940 636 aaKnown RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 CDK7P50613 346 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 COBLL1Q53SF7 1204 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 ZCCHC8Q6NZY4 707 aaKnown RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 POTEGQ6S5H5 508 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 HEATR4Q86WZ0 1026 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PALB2Q86YC2 1186 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 CIDEBQ9UHD4 219 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 GSTK1Q9Y2Q3 226 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 SPAG17Q6Q759 2223 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 CHI3L1P36222 383 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 SERPINB5P36952 375 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 TRIM39Q9HCM9 518 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 INO80Q9ULG1 1556 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 ATN1P54259 1190 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 C6orf203Q9P0P8 240 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 GTF3C4Q9UKN8 822 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 DYNC1LI2O43237 492 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PHKG2P15735 406 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 GTF2H1P32780 548 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 FLT3P36888 993 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PTGER2P43116 358 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PTPN21Q16825 1174 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 SLC20A1Q8WUM9 679 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PUS7LQ9H0K6 701 aaKnown RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PLAGL2Q9UPG8 496 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 MAGI2Q86UL8 1455 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 C2orf81A6NN90 581 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 ECM2O94769 699 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 GZMAP12544 262 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 HIRAP54198 1017 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 TGM3Q08188 693 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 KCNMA1Q12791 1236 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 SH3BP5LQ7L8J4 393 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 CENPTQ96BT3 561 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 HAVCR1Q96D42 359 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 ZSWIM1Q9BR11 485 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 COILP38432 576 aaPredicted RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 SNRNP35Q16560 246 aaKnown RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 PRKAG2Q9UGJ0 569 aa14.74□□□□□ -0.05
COL7A1-201ENST00000328333 R3HDM2Q9Y2K5 976 aaKnown RBP14.74□□□□□ -0.05
COL7A1-201ENST00000328333 IDH3BO43837 385 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 MTDHQ86UE4 582 aaKnown RBP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 ADSSL1Q8N142 457 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 CORO2BQ9UQ03 480 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 MAGEB2O15479 319 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 ADHFE1Q8IWW8 467 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 STN1Q9H668 368 aaKnown RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms